PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1398s0045.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 438aa    MW: 49333.1 Da    PI: 8.4757
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1398s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.4e-18113159148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT+eEd +l+++vkq+G + W+ I++++  gR +kqc++rw+++l
  Cagra.1398s0045.1.p 113 KGQWTAEEDRKLIKLVKQHGDRKWAIISEKLE-GRAGKQCRERWHNHL 159
                          799*****************************.*************97 PP
2Myb_DNA-binding544e-17165207145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          +++W++eE+  +v+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Cagra.1398s0045.1.p 165 KDSWSEEEERVFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 207
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.224108163IPR017930Myb domain
SuperFamilySSF466892.08E-28110206IPR009057Homeodomain-like
SMARTSM007172.9E-16112161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-26114166IPR009057Homeodomain-like
CDDcd001671.18E-14116159No hitNo description
PfamPF139213.1E-19116173No hitNo description
SMARTSM007171.2E-13164212IPR001005SANT/Myb domain
PROSITE profilePS5129418.914164214IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.1E-19167212IPR009057Homeodomain-like
CDDcd001677.85E-10167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEDQGTHEKS LAHCAAPPLT AVERFLNSQK NDTLCFKTQE RSIDRPILKT TRATEIRKDN  60
KQNMMFGPRK EKNLAVNNGN RNVIGEMIVK GGTTRDYQKS TTCKKRPYKN LIKGQWTAEE  120
DRKLIKLVKQ HGDRKWAIIS EKLEGRAGKQ CRERWHNHLR PDIKKDSWSE EEERVFVEAH  180
TRIGNKWAEI AKLIQGRTEN SIKNHWNATK RRQNSKRKHK RSRNADSTNS DVDDLSPSAK  240
RPCILEDYIR SIDNNDKGNG QHIITATGGS NIFLSTPNLE DGDSTSSLLD DPYDEELIFL  300
KNIFANHPVS LENMNLSQGS DEITQSSSSG FMFKNPNPKP NLHNNIVGNQ LGTMVTEPAI  360
TSHLASDIYL SDLLDGTASS SSLSFMSSNN SSEHAAENEL FVPQANSTSE RREMDLMEML  420
SGSSTIGSTS NIWFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-451112132104C-Myb DNA-Binding Domain
1msf_C5e-451112132104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209220KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1398s0045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290059.10.0transcription factor MYB64
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLR0FKF00.0R0FKF0_9BRAS; Uncharacterized protein
STRINGCagra.1398s0045.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]