PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1390s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 356aa MW: 39653.7 Da PI: 8.3692 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Cagra.1390s0010.1.p 68 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.182 | 37 | 62 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-11 | 48 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.96E-21 | 48 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.753 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.07E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 76 | 114 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAMEAGVLCR RKPVTPHLSA LYSSTNRIYS SLSSISIETF LKLLIGLQRC GKSCRLRWTN 60 YLRPDIKRGK FTVQEEQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLLKM 120 GIDPVTHKHK NETLSSSTGQ SKNAATLSHM AQWESARLEA EARLARESKL LHLQHYQNNN 180 LNKSGPQHCF THKTSTNWTK PNEGSGDQQL ESPTSTVTFS ENLPLMIMPL GIPTDIRNRN 240 NNIESSELPA MIEFAVSSST SSDVSLVKEH ENDWIRQINC PCPTEGIGEG FTSLLLGDSV 300 GRSLSTGKVE ATASSVAGAG VVSESEYNYY EDNKNYWNSI LNLVDSSPSD SQAMF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-18 | 49 | 117 | 40 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1390s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF249309 | 0.0 | AF249309.1 Arabidopsis thaliana putative transcription factor (MYB106) mRNA, complete cds. | |||
GenBank | AY519581 | 0.0 | AY519581.1 Arabidopsis thaliana MYB transcription factor (At3g01140) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641618.1 | 0.0 | transcription factor MYB106 isoform X1 | ||||
Swissprot | Q9LE63 | 1e-175 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | R0HW26 | 0.0 | R0HW26_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1390s0010.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-141 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1390s0010.1.p |