PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1383s0007.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

FAR1

Protein Properties

Length: 794aa MW: 91060.2 Da PI: 6.7383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1383s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.7	6.2e-31	85	177	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA+++GFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw v+ +++eHnH+ Cagra.1383s0007.1.p 85 SFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRtkDREIKRPRTITRVGCKASLSVKMHDSGKWLVSGFVKEHNHD 174 5**************************************999888555667889******************************** PP FAR1 89 lap 91 l+p Cagra.1383s0007.1.p 175 LVP 177 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-29	85	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-31	298	390	IPR018289	MULE transposase domain
Pfam	PF04434	2.2E-12	566	612	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.608	582	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HALDDDDMLD SPIMPCGISL GNSGNYFPSQ 60 EEGCDLLDLE PYDGLEFESE EAAKSFYNSY ARRIGFSTRV SSSRRSRRDG AIIQRQFVCA 120 KEGFRNMNEK RTKDREIKRP RTITRVGCKA SLSVKMHDSG KWLVSGFVKE HNHDLVPPDQ 180 VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR 240 QKSIEGEIQL LLDYLRQMNA DNPNFFYAVQ GAEDQSVGNV FWADPKARLD FSFFGDTVTF 300 DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFIINETEAS FVWLFNTWLA AMSAHPPVSI 360 TTDHDAVIRA AIIQVFPSAR HRFCKWHIFK KCQEKLSHVF LNHPSFESDF HKCVNLTESV 420 DDFESCWFSL LDKYELRKHE WLQAMYSDRR QWVPVYLRDT FFAEMSLTQR SDSINSYFDG 480 YINASTNLSQ FFKLYEKALE SRREKEVKAD YDTMNSPPVL KTPSPMEKQA SELYTRKLFI 540 RFQEELVGTL TFMASKADDD GDLVTYQVAK YGEAHKAHFV KFNVLEMRAN CSCQMFEFSG 600 IICRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY NLHAYANYLE SHTVRYNTLR 660 HKASNFVQEA GKSLYTCDVA VVALQEAAKT VSLAMNKEVR RTMVNGHLKE SSVTDGKQMC 720 CSEDCQQEAL AQQQPEDEMD KKINQLRNEL ELSNRKCEAY RTNLLSVLKE MEDHKLQVSI 780 KVQNIKISLK DNL*

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

MMDNEVLDFD IGVGVSSGGD VDDDAIDIEH HALDDDDMLD SPIMPCGISL GNSGNYFPSQ  60
EEGCDLLDLE PYDGLEFESE EAAKSFYNSY ARRIGFSTRV SSSRRSRRDG AIIQRQFVCA  120
KEGFRNMNEK RTKDREIKRP RTITRVGCKA SLSVKMHDSG KWLVSGFVKE HNHDLVPPDQ  180
VHCLRSHRQI SGPAKTLIDT LQAAGMGPRR IMSALIKEYG GISKVGFTEV DCRNYMRNNR  240
QKSIEGEIQL LLDYLRQMNA DNPNFFYAVQ GAEDQSVGNV FWADPKARLD FSFFGDTVTF  300
DTTYRSNRYR LPFAPFTGVN HHGQPILFGC AFIINETEAS FVWLFNTWLA AMSAHPPVSI  360
TTDHDAVIRA AIIQVFPSAR HRFCKWHIFK KCQEKLSHVF LNHPSFESDF HKCVNLTESV  420
DDFESCWFSL LDKYELRKHE WLQAMYSDRR QWVPVYLRDT FFAEMSLTQR SDSINSYFDG  480
YINASTNLSQ FFKLYEKALE SRREKEVKAD YDTMNSPPVL KTPSPMEKQA SELYTRKLFI  540
RFQEELVGTL TFMASKADDD GDLVTYQVAK YGEAHKAHFV KFNVLEMRAN CSCQMFEFSG  600
IICRHILAVF RVTNLLTLPP YYILKRWTRN AKSSVIFDDY NLHAYANYLE SHTVRYNTLR  660
HKASNFVQEA GKSLYTCDVA VVALQEAAKT VSLAMNKEVR RTMVNGHLKE SSVTDGKQMC  720
CSEDCQQEAL AQQQPEDEMD KKINQLRNEL ELSNRKCEAY RTNLLSVLKE MEDHKLQVSI  780
KVQNIKISLK DNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1383s0007.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	AY136457	0.0	AY136457.1 Arabidopsis thaliana unknown protein (At4g38180) mRNA, complete cds.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006285782.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	R0H1Z6	0.0	R0H1Z6_9BRAS; Uncharacterized protein
STRING	Cagra.1383s0007.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Cagra.1383s0007.1.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]