PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1378s0012.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

NAC

Protein Properties

Length: 235aa MW: 26996.9 Da PI: 4.5961

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1378s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.2	4.8e-51	1	122	7	128
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 FhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgkd++v+s Cagra.1378s0012.1.p 1 FHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTS 89 9*********************.99**********84335556888********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+kktLv+ykgrap+g +tdWvmheyrl Cagra.1378s0012.1.p 90 -QSRAIGMKKTLVYYKGRAPQGIRTDWVMHEYRL 122 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	56.614	1	145	IPR003441	NAC domain
Pfam	PF02365	8.5E-27	1	122	IPR003441	NAC domain
SuperFamily	SSF101941	9.55E-60	1	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
FHPTDEELVN YYLKRKINGQ EIELDIIPEV DLYKCEPWDL AEKSFLPSRD PEWYFFGPRD 60 RKYPNGFRTN RATRGGYWKS TGKDRRVTSQ SRAIGMKKTL VYYKGRAPQG IRTDWVMHEY 120 RLDDKDCDDP SSLQDSYALC RVFKKNGICS ELESEQQLQM GQCSFTTASM EINSSNNYNN 180 NNEYETMSPE VGVSACVEEV VDDKDESWMQ FITDDAWDTS SNAAAAMGHG QGVY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	1	146	21	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1378s0012.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056595	0.0	DQ056595.1 Arabidopsis thaliana no apical meristem family protein (At3g17730) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006298357.2	1e-177	NAC domain-containing protein 86
Swissprot	Q9FFI5	1e-82	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	R0I045	1e-176	R0I045_9BRAS; Uncharacterized protein (Fragment)
STRING	Cagra.1378s0012.1.p	1e-178	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-159	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Cagra.1378s0012.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]