PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1372s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 293aa MW: 32995.3 Da PI: 7.1293 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.5 | 1.2e-37 | 63 | 121 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk Cagra.1372s0028.1.p 63 PQEPRSCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKK 121 67899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 62 | 117 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.5E-33 | 65 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.481 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDHHQYHHHD HDQYQHQMTI TNDIPYNTIV TTQPPPPTTT TTTATTMIMD DEKKLMTTMS 60 TRPQEPRSCP RCNSSNTKFC YYNNYSLAQP RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK 120 KLPLLLPNSS TSSSTKNLPD LNPPFVFTSS PSNPSKTHDD NNELSLSFSS PMQDKRAQGH 180 YGHYTEQVVP GGQNGLFQAP MGMIQFRQEY DDHDHQKKNL GFSLDRNEEE IGNHDNFVVN 240 GGGSKMMYPY GAYEDHHQHV RHDDGNKKRE GGSSNELWSG IILGGDSGGP TW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1372s0028.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL161491 | 0.0 | AL161491.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | TM018A10 | 0.0 | AF013294.1 Arabidopsis thaliana BAC TM018A10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288361.1 | 0.0 | dof zinc finger protein DOF4.1 | ||||
Swissprot | Q9M161 | 1e-151 | DOF41_ARATH; Dof zinc finger protein DOF4.1 | ||||
TrEMBL | R0HC39 | 0.0 | R0HC39_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1372s0028.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14695 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00940.1 | 1e-140 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1372s0028.1.p |