PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1365s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 268aa MW: 30293.6 Da PI: 6.9717 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.9 | 1.3e-28 | 48 | 126 | 3 | 82 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82 g+kdrhsk+ T +g+RdRR+Rls+ +a++++dLq++LG+ ++sk i+WLl++ak ++ l+ +++++ s+ +++ + s+ Cagra.1365s0013.1.p 48 GGKDRHSKVFTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEAAKNDVDLLPPLQFPPGSFH-QVNPNLSQ 126 78*************************************************************99999655.22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.768 | 49 | 107 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-26 | 49 | 156 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MEMGLNSSIE DIRFKQEVAD DHNQPSSLSL MRQRWNNPRI VRVSKTFGGK DRHSKVFTVR 60 GLRDRRIRLS VMTAIQVYDL QERLGLSQPS KVIDWLLEAA KNDVDLLPPL QFPPGSFHQV 120 NPNLSQMGES FPGGVFDLGS CSNRDNMDLD NRKWARFDHN TSLDHGFDID HHHFSNSIQS 180 NKLYFPTSTT TSASSSYHYN IGHLQQSLLD QSGNVTVAFS TNSNLNPPFA ETMNSLFPRY 240 PSFLGGGHQL QLFNENSNSS NQRDHVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-18 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-18 | 54 | 108 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00497 | DAP | Transfer from AT5G08070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1365s0013.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006288467.1 | 0.0 | transcription factor TCP17 | ||||
Swissprot | Q9LEZ9 | 1e-120 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | R0H8V5 | 0.0 | R0H8V5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1365s0013.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3576 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 1e-117 | TCP domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1365s0013.1.p |
Publications ? help Back to Top | |||
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