PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1364s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 358aa    MW: 40622.2 Da    PI: 10.6059
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1364s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14891396
                         EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3  3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                         k l     + s  l++p  f+ ++ gg  +e++   l++  s  +W+vk+  ++++    lt+GWkeF+ +++L+ gD++vFk +++++f  
  Cagra.1364s0005.1.p  8 KPL--LPGFHS-FLTIPVAFFLKNiGGR-NEQMAAELRSdVSKITWKVKI--DGQR----LTRGWKEFALSHDLRIGDILVFKQERDMSF-- 87
                         555..444544.59******99997444.56688888886899*******..8888....***********************8777888.. PP

                         EEEE CS
                   B3 93 vvkv 96
                         +v++
  Cagra.1364s0005.1.p 88 HVTM 91
                         7765 PP
2B370.52.2e-22131214488
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                          + ++ ++l+ + l lp +f++++g++k+++ +++l +e+grsW+v l+ + + +++++++GW++F++ ngL++g f++Fkl++r +
  Cagra.1364s0005.1.p 131 K-VTTSNLSFDSLNLPLSFVRANGLDKRCG-EIILINEKGRSWTVDLKQKTSCEATYIKRGWRSFCQGNGLRAGSFFTFKLIQRgR 214
                          3.4555666667***************998.****************88888888**************************98633 PP
3B367.81.6e-21255351199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f++v++++++ ++++lvlp +f++ +g+k    kt++l d++g +W+ k++++ k +r+ l++GWkeF+++ng++ g++v+++l+++ ++
  Cagra.1364s0005.1.p 255 FVTVTLTPYNIRESNLVLPIHFTRVNGIKM--AKTMSLLDKHGVKWSTKMSFEVKNERMRLKGGWKEFCHSNGVRIGESVILELVWEADR 342
                          789999*****************9999885..459***************************************************9999 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                          + v+k+++k
  Cagra.1364s0005.1.p 343 SSVLKFCSK 351
                          899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-19397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.66395IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-17499IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-14592No hitNo description
SMARTSM010192.7E-20695IPR003340B3 DNA binding domain
PfamPF023626.7E-101589IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21122213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19125214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-20127216No hitNo description
PROSITE profilePS5086315.256127225IPR003340B3 DNA binding domain
SMARTSM010191.8E-23128222IPR003340B3 DNA binding domain
PfamPF023627.1E-20129214IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-22247351IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-21251350IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-18254349No hitNo description
SMARTSM010195.6E-25255352IPR003340B3 DNA binding domain
PfamPF023623.6E-21255351IPR003340B3 DNA binding domain
PROSITE profilePS5086314.762255351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVNQHFFKPL LPGFHSFLTI PVAFFLKNIG GRNEQMAAEL RSDVSKITWK VKIDGQRLTR  60
GWKEFALSHD LRIGDILVFK QERDMSFHVT MLGPSCCQYV PSLHNQNNLG KIQRKKKEAT  120
SSVDLSCFVA KVTTSNLSFD SLNLPLSFVR ANGLDKRCGE IILINEKGRS WTVDLKQKTS  180
CEATYIKRGW RSFCQGNGLR AGSFFTFKLI QRGRSLGLLR LSPREIKEED GLSEANVVKS  240
TLIWKPSSSP SQNRFVTVTL TPYNIRESNL VLPIHFTRVN GIKMAKTMSL LDKHGVKWST  300
KMSFEVKNER MRLKGGWKEF CHSNGVRIGE SVILELVWEA DRSSVLKFCS KVKPETN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1364s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023639569.10.0B3 domain-containing protein REM14, partial
SwissprotQ8GYM41e-106REM14_ARATH; B3 domain-containing protein REM14
TrEMBLR0HUY20.0R0HUY2_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1364s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-104B3 family protein