PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1361s0016.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

BES1

Protein Properties

Length: 318aa MW: 33903.6 Da PI: 7.3426

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1361s0016.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	199.4	1.1e-61	2	123	1	121
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasas 89 ++++r+ptw+ErEnnkrRERrRRaiaaki++GLR++Gny+lpk++DnneVlkALc+eAGw+ve DGttyrkg++++ e++e++g sa+as Cagra.1361s0016.1.p 2 TSGTRMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVELDGTTYRKGCSRPvERMEIGGGSATAS 91 5899********************************************************************999********* PP DUF822 90 pesslqsslkssalaspvesysaspksssfps 121 p+ss+q s+ ss++ sp++s+ a ++s + +s Cagra.1361s0016.1.p 92 PCSSYQPSPASSNFMSPASSSFANLTSGDGQS 123 ****88888888888888776666554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.0E-55	3	123	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MTSGTRMPTW RERENNKRRE RRRRAIAAKI FTGLRMYGNY ELPKHCDNNE VLKALCNEAG 60 WIVELDGTTY RKGCSRPVER MEIGGGSATA SPCSSYQPSP ASSNFMSPAS SSFANLTSGD 120 GQSLIPWLKH LSTTSSSSAS SSSRLPNYLY IPGGSISAPV TPPLSSPTAR TPRMNPDWQQ 180 LNNSFFVSST PPSPTRQIIP DSEWFSGIQL AQSVPASPTF SLVSQNPFGF KEEAASAAGG 240 GGGSRMWTPG QSGTCSPAIP PGADQTADVP MSEAVAPPEF AFGSNTNGLV KAWEGERIHE 300 ESGSDDLELT LGNSSTR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-22	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-22	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-22	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-22	6	75	372	441	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00248	DAP	Transfer from AT1G78700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1361s0016.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050430	0.0	AY050430.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBank	AY090331	0.0	AY090331.1 Arabidopsis thaliana At1g78700/F9K20_26 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F9K20	0.0	AC005679.1 Arabidopsis thaliana chromosome 1 BAC F9K20 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302567.1	0.0	BES1/BZR1 homolog protein 4
Swissprot	Q9ZV88	0.0	BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBL	R0IBF2	0.0	R0IBF2_9BRAS; Uncharacterized protein
STRING	Cagra.1361s0016.1.p	0.0	(Capsella grandiflora)
STRING	XP_006302567.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1917	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	1e-171	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Cagra.1361s0016.1.p