PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.13365s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 213aa MW: 22494.7 Da PI: 7.0799 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 115.5 | 2.2e-36 | 27 | 83 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprC+st tkfCyynny+l+qPryfCk+CrryWt+GG+lr+vPvGgg+r++ + Cagra.13365s0005.1.p 27 EPLPCPRCNSTTTKFCYYNNYNLAQPRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSS 83 6789*************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.7E-32 | 28 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.5 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 7.0E-21 | 33 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MPSEPNQTRP NRVLASTAAY PPPNLTEPLP CPRCNSTTTK FCYYNNYNLA QPRYFCKSCR 60 RYWTQGGTLR DVPVGGGTRR SSSKRHRSFS STATSSSSSS SVITTTTQEP ATTEATQSKG 120 GSNVNVSFAS LLGLGSGTGG LDYEFGYGYG YGLEEMSIDY LGLSSSTGGG EIPVVNGGGD 180 TWQLGEVEGG KSGGDSMIWP GLEISMQSND VK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00189 | DAP | Transfer from AT1G47655 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.13365s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303352.1 | 2e-98 | dof zinc finger protein DOF1.6 | ||||
Swissprot | Q9SX97 | 1e-84 | DOF16_ARATH; Dof zinc finger protein DOF1.6 | ||||
TrEMBL | R0IDG6 | 4e-97 | R0IDG6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.13365s0005.1.p | 1e-153 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9465 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 2e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.13365s0005.1.p |