PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1329s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-other
Protein Properties Length: 1014aa    MW: 114703 Da    PI: 8.3915
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1329s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.22.2e-11554856
                         -HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  8 tkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++eq+++L +++   ++yp+ +e+e+L k+lgLt + V+ WF+ rR + k
  Cagra.1329s0011.1.p  5 SPEQVQALDAFYLAgKMYPTSREMEDLGKSLGLTVKEVSGWFKRRRSRGK 54
                         89***********98********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-5160IPR001356Homeobox domain
PROSITE profilePS5007112.325156IPR001356Homeobox domain
CDDcd000862.53E-8352No hitNo description
Gene3DG3DSA:1.10.10.602.1E-9355IPR009057Homeodomain-like
SuperFamilySSF466893.42E-9357IPR009057Homeodomain-like
PfamPF000466.2E-9554IPR001356Homeobox domain
PROSITE profilePS508279.428247306IPR018501DDT domain
SMARTSM005711.3E-4255306IPR018501DDT domain
PfamPF027911.7E-7255301IPR018501DDT domain
PfamPF156123.7E-9525565IPR028942WHIM1 domain
PfamPF156132.3E-11646719IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1014 aa     Download sequence    Send to blast
MKRKSPEQVQ ALDAFYLAGK MYPTSREMED LGKSLGLTVK EVSGWFKRRR SRGKGVKSLA  60
DNGVGTENPQ SCNTSRIRSS TSSRCDLRAG VEKRCSVGIK KANCQELLTS QHILTKIFRK  120
DGPSLGSEFD HLPSGARKAP WLGTSSVDQQ KQRMARKRKI SELMDHTRPD CIREKTVKKH  180
GIGKGLMTVW RVMNPNRRNL SPCVDLLDER ATLPQSSARK PPHRKKKQKQ LASILKQKLL  240
QKRSTEKKRC SINREVVHFL YTYSVTLDIC PFTLDEFTRA FHDKDSFLLG KIHLSLLKLL  300
LLDVETELQR GSFSNLNISC KFLALLQSVE SQILILDMWK DSLNSLTWTE ILRQILVAAG  360
YGTLKCAAQS EELSKERRLM KKYGLRLGTL KGELFRMLNE QGNNGLEISE LANAPEVAVL  420
NLATAQEERE NSICSTLASD ITLFEKISES TYRVRVNCFS EDPDKSQSDS DVSGSVDDED  480
CSSSSGDEVE RVSENPALRK VKYRKRQKHK SKMREVSSEI DESHPGEPWL LGLMEGEYSD  540
LSIEEKLDVL VALIDLLSSG STIRMEDIPR AMVDCAPSIY SHGSGGKIKR SSFNQYRRGS  600
WVHGGEFHGT QPLTKSSDSH PVDSSSIVGA FAKLAGEKAN NVHPMQSVYL GSDRRFNRYW  660
LFLGPCSSND PGHRCVFFES SEDGHWEVID NKEALRALLS VLDDRGRREA RLIESLEKRE  720
SFLCQAMLSR QMAQSETAHF TDIVREDSSS PVSDIDNNLC PSEIANDQVS SQHAAIVFEI  780
GSKREKSLLW SLLQEFDEWI WADFNFNLNA VKHRRRSYLD SLTRCKSCHD LYWRDEKHCK  840
ICHATFEVDI DLEERYAIHV ATCRRKEECD AFPDHKVLSS QLQSLKAAVY AIESAMPEDA  900
LIGAWRKSAH RLWAKRLRRS STVSEITQVI GDFVGAINED WLWHSSDQAH SNALLGETIS  960
CFPSMPQTTS AMALWLVKLD TLIAPFVEKA HSERNQLFCR TRNTSRRAST TEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1329s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0496400.0AL049640.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T20K18 (ESSA project).
GenBankAL1615340.0AL161534.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283038.10.0homeobox-DDT domain protein RLT3 isoform X1
SwissprotF4JRF50.0RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBLR0F3L10.0R0F3L1_9BRAS; Uncharacterized protein
STRINGCagra.1329s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96382125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.10.0Homeodomain-like transcriptional regulator