PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1310s0016.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 305aa    MW: 35033.1 Da    PI: 6.2412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1310s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.83e-5561331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv +yL +kv+g+ ++l e+i+evd+yk+ePwdLp k  + +++ ewyf+s+rdkky++g+r+nrat +gyWkatgk
  Cagra.1310s0016.1.p   6 LPPGFRFHPTDEELVAYYLDRKVNGRAIDL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATGAGYWKATGK 94 
                          79****************************.99**************95334455788******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl
  Cagra.1310s0016.1.p  95 DRTVES-KKMKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133
                          *****9.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-633153IPR003441NAC domain
PROSITE profilePS5100559.7836153IPR003441NAC domain
PfamPF023659.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKVNG RAIDLEIIPE VDLYKCEPWD LPEKSFLPGN  60
DMEWYFYSTR DKKYPNGSRT NRATGAGYWK ATGKDRTVES KKMKMGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLTHAPSSS LKESYALCRV FKKNIQIPKR KGGEEEESTS VGKDEEEKEE  180
KKWRKDDGNY IEDESLKRAS AETSSSELTQ GVLVDEANSS SLFALHFSSS LLNDHDHLFS  240
NYPHDHQHHL PYHPPLQLQD FPQLSMNEAD IMSSIQQEFQ CRDSMNGTLD EIFSSSSTNF  300
PASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-56115412166NO APICAL MERISTEM PROTEIN
1ut4_B6e-56115412166NO APICAL MERISTEM PROTEIN
1ut7_A6e-56115412166NO APICAL MERISTEM PROTEIN
1ut7_B6e-56115412166NO APICAL MERISTEM PROTEIN
4dul_A6e-56115412166NAC domain-containing protein 19
4dul_B6e-56115412166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00205DAPTransfer from AT1G54330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1310s0016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1762780.0AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303229.10.0NAC domain-containing protein 86
SwissprotQ9FFI58e-80NAC86_ARATH; NAC domain-containing protein 86
TrEMBLR0GJN60.0R0GJN6_9BRAS; Uncharacterized protein
STRINGCagra.1310s0016.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81232640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.11e-160NAC domain containing protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]