PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1262s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 322aa    MW: 36386.7 Da    PI: 8.5897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1262s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.4e-12658148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                         +++WT+eE+e lv +++++G+g W+ I +        + Rt  ++k++w++ +
  Cagra.1262s0035.1.p  6 KNKWTPEEEEALVAGIAKYGPGKWSNIIEDPEfapqlLERTNINLKDKWRNMK 58
                         689************************99999999***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.006162IPR017930Myb domain
SuperFamilySSF466899.33E-16360IPR009057Homeodomain-like
SMARTSM007172.9E-9560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-15557IPR009057Homeodomain-like
PfamPF002497.9E-8658IPR001005SANT/Myb domain
CDDcd116602.20E-18858No hitNo description
PROSITE profilePS5150419.22391168IPR005818Linker histone H1/H5, domain H15
SMARTSM005263.9E-798163IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.1E-10100170IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.03E-10103171IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.1E-6103161IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLGHRKNKWT PEEEEALVAG IAKYGPGKWS NIIEDPEFAP QLLERTNINL KDKWRNMKTR  60
VGSMEKSRTQ TIKSVSVSFT PAKTSPSNKL SPSSSSDMSN ATSYCPIIFQ AISTINDESG  120
SDRKEILSFI EERQEVPKNF KKLLSNSLRL LVSQDKLKKV RNHYKISITK ATKPTHILHP  180
KDSTNPPELP STCVMSTKTK ETHDIDAAAN KVAEGFDVGY EDRQDFRKFL SECLKILVSQ  240
GKLEKVLDRY KMSELENKLL EAAPEVVAMK LAESDNKRLI AAEAVEEEQR MHKLVEESHT  300
MLQLSIEIHK QCALGEEFVL R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1262s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305374.10.0telomere repeat-binding factor 5 isoform X2
TrEMBLR0GQR30.0R0GQR3_9BRAS; Uncharacterized protein
STRINGCagra.1262s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1668455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-48MYB_related family protein