PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1262s0027.2.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 462aa    MW: 51073.8 Da    PI: 8.4426
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1262s0027.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-0592114123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k F r  nL+ H r H
  Cagra.1262s0027.2.p  92 FICEVCNKGFQRDQNLQLHKRGH 114
                          89******************988 PP
2zf-C2H214.20.00013169191123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Cagra.1262s0027.2.p 169 WKCEKCSKKYAVQSDWKAHAKTC 191
                          58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.4E-691114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-791114No hitNo description
PfamPF121713.5E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.82492114IPR007087Zinc finger, C2H2
SMARTSM003550.02692114IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM0035545134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMMNREMIFH QQQQQQQVEE NMSNLTSASG DQASVSSGNR TETSGSNLIH QQEQCFVPQS  60
SIKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG FQRDQNLQLH KRGHNLPWKL  120
KQRSNKDVVR KKVYICPEPG CVHNHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV  180
QSDWKAHAKT CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEESARAIPN PILIQSSASP  240
SRHGHHQTQQ QNITFSTSSQ NVISSNNLHA PPMKQEESHH HFQNIPPWLA SSNPNNPNGS  300
SNNGNLFPPL ASSAPTGRSN FHHPLAAMSA TALLQKAAQM GSKKSSTAPE EEEKPSRSSY  360
NNLITTTMAA MMTSPSGPAG FGFQDYYMMN HHGGGGEEAF NGSFVAGDDK NDVVDDGGGE  420
TRDFLGLRSL MSHNEILSFA NNLGNCLNSS ASEEQQHSHQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36165226364Zinc finger protein JACKDAW
5b3h_F1e-36165226364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131KLKQRSNKDVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1262s0027.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271940.0AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBankAY1504210.0AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307340.20.0protein indeterminate-domain 7 isoform X2
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLR0ISA40.0R0ISA4_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.1262s0027.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]