PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1226s0080.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

GRF

Protein Properties

Length: 430aa MW: 47046.7 Da PI: 7.171

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1226s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.6	5.1e-24	181	224	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rC+RtDGKkWRCsr+v++++k+CErH h++r rsrk++e+ Cagra.1226s0080.1.p 181 LEPWRCKRTDGKKWRCSRNVIPDQKYCERHTHKSRPRSRKHVES 224 69***************************************997 PP
2	QLQ	49.9	1e-17	111	145	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 aF+ aQ+q+L++Q +yKy++a++PvP+eLl + + Cagra.1226s0080.1.p 111 AFSSAQWQELERQKNIYKYMMASVPVPSELLTPFP 145 8******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.7E-9	110	146	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.1E-11	111	143	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.97	111	146	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.842	180	224	IPR014977	WRC domain
Pfam	PF08879	1.1E-19	182	223	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0009941	Cellular Component	chloroplast envelope
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MATRAERKED YVGGFGFGVV EHSHKDVMVL PHHHYHPSYS SPSSSSLCYC SAGLGDPMFS 60 VSSNQAYTSS HSDMFSLAGS TSASVTLADP FYTLSSSGEM GRSLSENAGA AFSSAQWQEL 120 ERQKNIYKYM MASVPVPSEL LTPFPKNHPS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD 180 LEPWRCKRTD GKKWRCSRNV IPDQKYCERH THKSRPRSRK HVESSHQSSN HNDTRNAKND 240 TSQFTRAYPQ FYGQPVNQVP VLSTLPSSTS SYDHHRGLRW FRKEGDAIGT LNPEIHDAVQ 300 LKDGSSRELK RGFGYDLNFM QKEPTVDQSF GALQSLLSLN QTPHNQETRR FVVEGKQDEA 360 MGSSLTLSMA GGSMEEAEET NQHQWVSHEG PSWLYSTTPG GPLAEALCLG VSNNPSSSTT 420 TSSCSRSSS*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MATRAERKED YVGGFGFGVV EHSHKDVMVL PHHHYHPSYS SPSSSSLCYC SAGLGDPMFS  60
VSSNQAYTSS HSDMFSLAGS TSASVTLADP FYTLSSSGEM GRSLSENAGA AFSSAQWQEL  120
ERQKNIYKYM MASVPVPSEL LTPFPKNHPS NTNPDVTVAV ATGGSLQLGI ASSASNNTAD  180
LEPWRCKRTD GKKWRCSRNV IPDQKYCERH THKSRPRSRK HVESSHQSSN HNDTRNAKND  240
TSQFTRAYPQ FYGQPVNQVP VLSTLPSSTS SYDHHRGLRW FRKEGDAIGT LNPEIHDAVQ  300
LKDGSSRELK RGFGYDLNFM QKEPTVDQSF GALQSLLSLN QTPHNQETRR FVVEGKQDEA  360
MGSSLTLSMA GGSMEEAEET NQHQWVSHEG PSWLYSTTPG GPLAEALCLG VSNNPSSSTT  420
TSSCSRSSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1226s0080.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL109619	0.0	AL109619.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T19F6, partial sequence (ESSA project).
GenBank	AL161561	0.0	AL161561.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61.
GenBank	ATAC002343	0.0	AC002343.1 Arabidopsis thaliana chromosome IV BAC T19F6 genomic sequence, complete sequence.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023634790.1	0.0	growth-regulating factor 8
Swissprot	Q9SU44	0.0	GRF8_ARATH; Growth-regulating factor 8
TrEMBL	R0H228	0.0	R0H228_9BRAS; Uncharacterized protein
STRING	Cagra.1226s0080.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7836	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24150.1	0.0	growth-regulating factor 8

Link Out ? help Back to Top
Phytozome	Cagra.1226s0080.1.p

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]