PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1226s0063.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARF
Protein Properties Length: 630aa    MW: 71273.6 Da    PI: 6.6778
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1226s0063.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24115216199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ ed +g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF 
  Cagra.1226s0063.1.p 115 FSKVLTASDTSTHGGFSVLRKHATEClppldmtQ--QTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL 202
                          88****************************9643..445569************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+v+v+r+
  Cagra.1226s0063.1.p 203 --RGENGELRVGVRRA 216
                          ..449999******97 PP
2Auxin_resp111.11.1e-36241320183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a ha++ k++F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+eds+err+sGtv+gv+d++p +W++SkWr+L+
  Cagra.1226s0063.1.p 241 ACHATQAKTMFIVYYKPRT--SQFIISLNKYLEAMDNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSP-HWKDSKWRCLE 320
                          6799**************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-39106244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-42108230IPR015300DNA-binding pseudobarrel domain
CDDcd100175.88E-21113215No hitNo description
PROSITE profilePS5086312.731115217IPR003340B3 DNA binding domain
PfamPF023623.5E-22115216IPR003340B3 DNA binding domain
SMARTSM010194.6E-24115217IPR003340B3 DNA binding domain
PfamPF065071.4E-32241319IPR010525Auxin response factor
PfamPF023095.3E-14501606IPR033389AUX/IAA domain
SuperFamilySSF542772.65E-12512594No hitNo description
PROSITE profilePS5174525.801518610IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MANHAGECLY DELWKLCAGP LVDVPQAGER VYYFPQGHME QLEASTRQDL NTRKPLFDLP  60
PKILCNVMNV RLQAEKDTDE VYAQITLIPV GTEVDEPMSP DRSPPETQKP KVHSFSKVLT  120
ASDTSTHGGF SVLRKHATEC LPPLDMTQQT PTQELVAEDV HGYQWKFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDTFV FLRGENGELR VGVRRANRQQ SSMPSSVISS HSMHLGVLAT  240
ACHATQAKTM FIVYYKPRTS QFIISLNKYL EAMDNKFSVG MRFKMRFEGE DSPERRYSGT  300
VIGVKDCSPH WKDSKWRCLE VHWDEPASIP RPDKVSPWEI EPFVTSESVP QSVMVKNKRP  360
RQFSEVSALD VGITASNLWS SVLSQSHEFA QSCITSQRSP SQQCYRDSTE DAKKSDWLNN  420
SYSVSNVSKE STLNDQMISP VEQKKPETTG TYRLFGIDLM SPIEEKTAPM RPINITTPTM  480
DSNSDPKSGI SKVPEEKKQE PAQTSPKEVQ SKQNSSTRSR TKVQMQGVPV GRAVDLAALN  540
GYNELIEDLE KLFDIKGELQ SRNQWEVVFT DDEGDMMLVG DDPWPEFCNM VKRIFIWSKE  600
EVKKMTPGNQ LRMMLTEVET TSKTDNHSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165734317355Auxin response factor 1
4ldw_A1e-165734317355Auxin response factor 1
4ldw_B1e-165734317355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1226s0063.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0821760.0AF082176.1 Arabidopsis thaliana auxin response factor 9 (ARF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023634150.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLR0F8V90.0R0F8V9_9BRAS; Auxin response factor (Fragment)
STRINGCagra.1226s0063.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9