PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1226s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 320aa MW: 35797.2 Da PI: 5.9826 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.4 | 1.4e-28 | 155 | 215 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK++ g++fprsYYrCt++ +C+++k+v+rs+ d +v+e+tY+g+H+++ Cagra.1226s0044.1.p 155 DDVYSWRKYGQKDILGAKFPRSYYRCTHRstqNCWATKQVQRSDGDATVFEVTYRGTHTCS 215 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.39 | 149 | 212 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-27 | 151 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-25 | 153 | 215 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-38 | 154 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 155 | 214 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MEGMDMLSWE QKTLLNELIL GLEAAKKLQA RLREAPSPLF SPTTAETNQI LVNQIVSSCE 60 RSLLMLNWSS LPTTVQLIPT PATVVPVVNS GGVPESPASI NGSPRSEEFV VDGGGSSDSH 120 HRQDYIFNSK KRKMLPKWSE KVRISPERGL EGPQDDVYSW RKYGQKDILG AKFPRSYYRC 180 THRSTQNCWA TKQVQRSDGD ATVFEVTYRG THTCSQAITP PPASPEKQED TRLRPAVTNT 240 TQKPKDLLQS LKSNLTVRTD GLDDGKDVFS FPDTPPFYTY GDFSHVESSP PIFDVADWFN 300 PTVEIDTTFP SFLHESIYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 154 | 212 | 16 | 74 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 154 | 212 | 16 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:20409006). May regulate the early events of leaf senescence (PubMed:17369373, PubMed:20409006). Negatively regulates the expression of ESR/ESP (PubMed:20409006). Together with WRKY46 and WRKY70, promotes resistance to P.syringae, probably by enhancing salicylic acid (SA)- dependent genes. Contributes to the suppression of jasmonic acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892). {ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006, ECO:0000269|PubMed:22325892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1226s0044.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) (PubMed:22268143, PubMed:22325892). Strong accumulation during leaf senescence (PubMed:22268143). Down-regulated by jasmonate. Triggered by P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF272748 | 0.0 | AF272748.1 Arabidopsis thaliana WRKY DNA-binding protein 53 (WRKY53) mRNA, complete cds. | |||
GenBank | AF370614 | 0.0 | AF370614.1 Arabidopsis thaliana putative protein (F9D16.280) mRNA, complete cds. | |||
GenBank | AK227938 | 0.0 | AK227938.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-49-L02. | |||
GenBank | BT033113 | 0.0 | BT033113.1 Arabidopsis thaliana unknown protein (At4g23810) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006285460.1 | 0.0 | probable WRKY transcription factor 53 | ||||
Swissprot | Q9SUP6 | 0.0 | WRK53_ARATH; Probable WRKY transcription factor 53 | ||||
TrEMBL | R0H499 | 0.0 | R0H499_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1226s0044.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1226s0044.1.p |