PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1226s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 34208.9 Da PI: 6.3718 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.2 | 1.1e-30 | 142 | 200 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ver+ ++p+ ++itY++eHnhe Cagra.1226s0001.1.p 142 SDAWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERNPQNPEKFTITYTNEHNHE 200 7**************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-31 | 127 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-26 | 136 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.822 | 136 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-36 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-25 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGEVAAYMDE GDLEAIVRGY SGSGDAFSGE SSGGFSPSFC LPMETSSFYE PDMETTGSDE 60 LGELYKPFYP FSTQTILTTS SVSVPEDSRS FLDDKKQRTH GCLLSNGSRV DHIRIPESKS 120 KKSKKNQQKR VVEQVKEENL LSDAWAWRKY GQKPIKGSPY PRSYYRCSSS KGCLARKQVE 180 RNPQNPEKFT ITYTNEHNHE LPTRRNSLAG STRAKSSQTK STITKKSGKE VVSSPTSNPT 240 IASADESSVA VQDMCVAEMS THQAAGEIKG MSNGLPSDLM SGTGTFPVFT GDFDELLNSQ 300 EFFSGYLWNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-20 | 132 | 202 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-20 | 132 | 202 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 22, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00448 | DAP | Transfer from AT4G23550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1226s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 30 minutes after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF442394 | 0.0 | AF442394.1 Arabidopsis thaliana WRKY transcription factor 29 (WRKY29) mRNA, complete cds. | |||
GenBank | BT026071 | 0.0 | BT026071.1 Arabidopsis thaliana At4g23550 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023635089.1 | 0.0 | probable WRKY transcription factor 29 | ||||
Swissprot | Q9SUS1 | 0.0 | WRK29_ARATH; Probable WRKY transcription factor 29 | ||||
TrEMBL | R0F622 | 0.0 | R0F622_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1226s0001.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6090 | 25 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23550.1 | 1e-163 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1226s0001.1.p |