PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.12068s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 288aa    MW: 31644.9 Da    PI: 8.4701
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.12068s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.5e-3846105463
                zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                           +a++cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+sss
  Cagra.12068s0002.1.p  46 EAQNCPRCESPNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRSSS 105
                           5789****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-234697IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3247102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.97548102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDPQQEISNE SLETILVSST KGSNNNIKKM EEEMKKKGSR GELGGEAQNC PRCESPNTKF  60
CYYNNYSLSQ PRYFCKSCRR YWTKGGTLRN VPVGGGCRRN KRSSSFSKNN NNNNKSINFH  120
NDPLHQNPLI TGMTPSSFGY DSIDLNLAFA SLQKHHSSSQ ASTTPSFGFG GDLSIYRNSG  180
NDVIFGGQNG HFNNSLCYGF MSGNGNNNHQ NDIKMASTLG ISLEGNERKQ ENVNNISENP  240
SKVLWGFPWQ MTGDSAGVVP EIDPGRESWN GLASSWNSNG LLNTPLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.12068s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0704210.0AY070421.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g28510) mRNA, complete cds.
GenBankAY0856350.0AY085635.1 Arabidopsis thaliana clone 16423 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294737.11e-178dof zinc finger protein DOF2.1
SwissprotQ8LE431e-156DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLR0HQQ71e-176R0HQQ7_9BRAS; Uncharacterized protein
STRINGCagra.12068s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.11e-149Dof family protein