PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1201s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NF-YB
Protein Properties Length: 267aa    MW: 29483.6 Da    PI: 3.8452
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1201s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.92.8e-1410105797
                NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +lP+a v r++k+ l +     +  i k+a     e +  fi f+++ a+d c+  +r+t+++dd++ al ++ f +++eplk+ l+ ++
  Cagra.1201s0002.1.p  10 ELPLAIVRRVVKEKLSEcspdyDVSIHKEALLAFSESARIFIHFLSATANDFCKDARRQTMKADDVFKALEEMDFSEFLEPLKASLEDFK 99 
                          69**********999752222356899**************************************************************9 PP

                NF-YB  92 elegek 97 
                          + +++k
  Cagra.1201s0002.1.p 100 KRNADK 105
                          988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-2710109IPR009072Histone-fold
PfamPF008084.8E-81079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.67E-1812101IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-27153180IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MESEKVVVDE LPLAIVRRVV KEKLSECSPD YDVSIHKEAL LAFSESARIF IHFLSATAND  60
FCKDARRQTM KADDVFKALE EMDFSEFLEP LKASLEDFKK RNADKKAGGG GAASKPAGGG  120
AATKPTETKK RKQEGPSTQK NARKSKRDEG GSKNDEGSEK ENTEEENGND EENDEENEND  180
DEDIEENGND VEDENDDENT EENGNDEENE NEDEGNSMED NENENEESGN EENSMEENGS  240
ENGEDNDNNN SSNSSGEEVE GDEDDD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1201s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0040831e-120BT004083.1 Arabidopsis thaliana clone RAFL15-10-G12 (R20802) putative CCAAT-binding transcription factor subunit (At2g27470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640708.11e-118DNA polymerase epsilon subunit 3
TrEMBLA0A1J3FZQ21e-81A0A1J3FZQ2_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
TrEMBLA0A1J3IA232e-81A0A1J3IA23_NOCCA; DNA polymerase epsilon subunit 3 (Fragment)
STRINGCagra.1201s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120072430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.14e-72nuclear factor Y, subunit B11