PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1194s0065.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CO-like
Protein Properties Length: 283aa    MW: 31404 Da    PI: 5.6429
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1194s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-061456440
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         r C+++ +   + +Ce ++ +lC++C    H        H++v
  Cagra.1194s0065.1.p 14 RACDTCRSAACTVYCEADSAYLCNTCDARVHAAnrlasrHERV 56
                         57******99******************999556677778776 PP
2zf-B_box36.59.8e-1256101342
             zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                           r+C+ +e+ ++ +fC+ +   lC  C  e+H+       H++vp+
  Cagra.1194s0065.1.p  56 VRVCQSCESAPAAFFCKADAASLCTACDAEIHSAnplarrHQRVPI 101
                          689*****************************66899999**9997 PP
3CCT68.91.3e-23213255143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae RpR+KGrF+k+
  Cagra.1194s0065.1.p 213 REARVLRYREKKKTRKFDKTIRYASRKAYAEIRPRIKGRFAKR 255
                          9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-91158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6231158IPR000315B-box-type zinc finger
CDDcd000213.33E-71458No hitNo description
PROSITE profilePS5011912.2354101IPR000315B-box-type zinc finger
PfamPF006433.2E-956101IPR000315B-box-type zinc finger
CDDcd000212.68E-957101No hitNo description
SMARTSM003362.3E-1259101IPR000315B-box-type zinc finger
PROSITE profilePS5101716.44213255IPR010402CCT domain
PfamPF062032.3E-17213255IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCNTCD ARVHAANRLA SRHERVRVCQ  60
SCESAPAAFF CKADAASLCT ACDAEIHSAN PLARRHQRVP ILPLSANSCD SMAPSEADDA  120
DNDDDDREVA SWLLPNPGKT SGNQNNGFLF GVEYLDLVDY SSSLDNQFDD HHVVPESTAS  180
DITVHHPRTT RETIDQLSGP PTPMVQQLTP MEREARVLRY REKKKTRKFD KTIRYASRKA  240
YAEIRPRIKG RFAKRIEIEA EAEEIFSASL MSETGYGIVP SF*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1194s0065.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1802770.0JQ180277.1 Arabidopsis halleri subsp. halleri putative flowering-time constans protein (COL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485482.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-172COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLI3RT181e-176I3RT18_ARALL; Putative flowering-time constans protein
STRINGCagra.1194s0065.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-156CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]