PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1194s0049.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 265aa MW: 28364.3 Da PI: 7.6766

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1194s0049.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.5	2.4e-29	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a p++ r+ +++sl+ eA+ r+ +P+yG+vg+++++++ Cagra.1194s0049.1.p 4 SCNGCRVLRKGCSEDCSIRPCLawiksPEAQANATVFLAKFYGRAGLMNLINAGPDHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNW 93 6*************************************************************************************** PP DUF260 86 qleqlkaelallke 99 ql+q ++e+++ +e Cagra.1194s0049.1.p 94 QLCQDAVEAVMKGE 107 ****99988766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.133	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLAWIKS PEAQANATVF LAKFYGRAGL MNLINAGPDH 60 LRPGIFRSLL HEACGRIVNP IYGSVGLLWS GNWQLCQDAV EAVMKGEPIT EIAADAATIG 120 QGPPLKIYDI RHNSKDDNSA AATGSTDLKR AKTRRAKRVA ALEKQAEYDG KSGGGEASHE 180 SSLSHQSEIV AAHEGESKES ESNASEVLAL SPPTVQGCGE IKLDLTLGLE PVSHAYDVVP 240 VKKRRIGVFG TCQKESTCKT ELML*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1194s0049.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086061	0.0	AY086061.1 Arabidopsis thaliana clone 20907 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299215.1	0.0	LOB domain-containing protein 41
Swissprot	Q9M886	1e-174	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	R0I6Q7	0.0	R0I6Q7_9BRAS; Uncharacterized protein
STRING	Cagra.1194s0049.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7721	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-168	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Cagra.1194s0049.1.p