PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.1157s0017.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 500aa MW: 53718.3 Da PI: 6.0177

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.1157s0017.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.3e-09	325	373	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Cagra.1157s0017.1.p 325 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 373 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-17	320	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.86E-11	320	377	No hit	No description
PROSITE profile	PS50888	15.478	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-17	323	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-6	325	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDISEEKRNR DSAVNYDSVD NPAVDWQVSS SNPVSAPIDS YTQENLISAC PSSCSPSQMM 60 DSFGQTLWYD PTSVQPVGYG GFSVQNNGGN ASSSSFRGNV DRSLEMGWNL PNLLPPKGNG 120 LFLPNASSFL PPSMAQFPAD SGFIERAARF SLFSGGNFSD MVNQPLGNPE AIGLFLQGGG 180 TMQGQCQSNE LNVGELHNDA STVVKEPNVR SSEQLKPNVP GSGNVSEDTQ SSGGNGQKGG 240 ETSSKGLDTR KRKRNGQNSE AAQSHRSQQS EEEPDSNGDK KRNNEQSPNS PGKKTNSGKQ 300 QGKQSSDPPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV 360 MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGSS STTPFPPNMS 420 MAYPPLPHGF MQQTLSSIGR TISSPLSPTN GGFKRQDTNG WEGDLQNVIH INYGAGEVTP 480 DPQAAATASL PAANMKVEP*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDISEEKRNR DSAVNYDSVD NPAVDWQVSS SNPVSAPIDS YTQENLISAC PSSCSPSQMM  60
DSFGQTLWYD PTSVQPVGYG GFSVQNNGGN ASSSSFRGNV DRSLEMGWNL PNLLPPKGNG  120
LFLPNASSFL PPSMAQFPAD SGFIERAARF SLFSGGNFSD MVNQPLGNPE AIGLFLQGGG  180
TMQGQCQSNE LNVGELHNDA STVVKEPNVR SSEQLKPNVP GSGNVSEDTQ SSGGNGQKGG  240
ETSSKGLDTR KRKRNGQNSE AAQSHRSQQS EEEPDSNGDK KRNNEQSPNS PGKKTNSGKQ  300
QGKQSSDPPK DGYIHVRARR GQATNSHSLA ERVRREKISE RMKFLQDLVP GCNKVTGKAV  360
MLDEIINYVQ SLQRQVEFLS MKLATVNPQM DFNLEGLLAK DALQLRAGSS STTPFPPNMS  420
MAYPPLPHGF MQQTLSSIGR TISSPLSPTN GGFKRQDTNG WEGDLQNVIH INYGAGEVTP  480
DPQAAATASL PAANMKVEP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.1157s0017.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK318937	0.0	AK318937.1 Arabidopsis thaliana AT1G68920 mRNA, complete cds, clone: RAFL22-22-I01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006302168.1	0.0	transcription factor bHLH49
Swissprot	Q9CAA9	0.0	BH049_ARATH; Transcription factor bHLH49
TrEMBL	R0GH97	0.0	R0GH97_9BRAS; Uncharacterized protein
STRING	Cagra.1157s0017.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5900	25	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cagra.1157s0017.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]