PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1150s0022.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 373aa    MW: 41923.8 Da    PI: 6.6987
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1150s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-37105164261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s+ntkfCy+nny+++qPr+fC++C+ryWt+GG++r vPvG+grrknk +
  Cagra.1150s0022.1.p 105 PDKILPCPRCNSANTKFCYFNNYNVNQPRHFCRNCQRYWTAGGSMRTVPVGSGRRKNKGW 164
                          7899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-30101162IPR003851Zinc finger, Dof-type
PfamPF027011.4E-30107162IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.351109163IPR003851Zinc finger, Dof-type
PROSITE patternPS013610111147IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSSTIGMSEV RDTPVKLFGW TITSVSHDPL SSSSPVLPDS SSSSSSSPSL QPHMLNDQSA  60
TEDTSLKISS DRNNESKETS ENSDDQHSEI TTTTSEEKTT DLKKPDKILP CPRCNSANTK  120
FCYFNNYNVN QPRHFCRNCQ RYWTAGGSMR TVPVGSGRRK NKGWVSSDHY LHITSEDTDH  180
YNSSSAKILN FESSDSSVTE NAKHHQSRDA NTNPDFVSQE QNNFQGFLPP QETSPVSHPW  240
PYQYPPNSSF YHMPVYWGCA VPVWSTVEAS TCLGKRTRDE ASHETARESK DAFVRARLVS  300
ESQSINNEAS IATENNMWYP VSMKHEKTKQ FNFFSDGSER KSNNNRFVPQ TYLNLQANPA  360
AMARSMNFRE SM*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1150s0022.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305125.10.0dof zinc finger protein DOF1.3
SwissprotQ9LQX40.0DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLR0ILX50.0R0ILX5_9BRAS; Uncharacterized protein
STRINGCagra.1150s0022.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140821624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.10.0Dof family protein