PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1125s0016.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 353aa MW: 39839.2 Da PI: 4.9939 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 127.5 | 1.4e-39 | 86 | 233 | 2 | 129 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceae 76 +kkdrhskihT++g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++k+aike ++ + + e Cagra.1125s0016.1.p 86 VVKKDRHSKIHTAQGLRDRRVRLSIGVARQFFDLQDMLGFDKASKTLDWLLKKSKKAIKEVVQEkklindsiedfgdnnG------GDVE 169 589*************************************************************8777665554433221......1112 PP TCP 77 sssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrek 129 +++++++ g ++ + k+ +++k++ + +n++ sra+ + +a+e tre Cagra.1125s0016.1.p 170 EEVEEED----GdksfvygsspescgEKLVCEVKKADKRKKKDELRNISSkGSRANTKGKAKEVTREM 233 2222222....022345566666677777777777777777777788777699999999999999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-37 | 88 | 232 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.898 | 88 | 146 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MSSSNNDYND GNNNGVYPLS LYLSSLSGHQ DIIRNPYNQQ LTASPGQMVT AVPESLMDYM 60 AFNSNNNAVN QKGFELPEVS REIKKVVKKD RHSKIHTAQG LRDRRVRLSI GVARQFFDLQ 120 DMLGFDKASK TLDWLLKKSK KAIKEVVQEK KLINDSIEDF GDNNGGDVEE EVEEEDGDKS 180 FVYGSSPESC GEKLVCEVKK ADKRKKKDEL RNISSKGSRA NTKGKAKEVT REMAYDHPET 240 ISDITQSETM DSFKRSIFSN EGEDMTHSFY KETIGEFYNQ ESILTKMKIN MPTNMDQSYN 300 QHTGAFMLTD QGSSSNYNTI DLPLLDYNYE QNPFVDQTFC AITDTNFPGG FP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-14 | 93 | 146 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-14 | 93 | 146 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in petal morphogenesis. {ECO:0000269|PubMed:17940055}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1125s0016.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023644287.1 | 0.0 | transcription factor TCP1 | ||||
Swissprot | Q9FYG7 | 1e-159 | TCP1_ARATH; Transcription factor TCP1 | ||||
TrEMBL | R0GHY5 | 0.0 | R0GHY5_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1125s0016.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6733 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 1e-148 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1125s0016.1.p |
Publications ? help Back to Top | |||
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