PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1125s0011.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 989aa    MW: 110170 Da    PI: 5.7266
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1125s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1168.61e-52111272117
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          ++e ++rwlk+ e+  iL+n+e+ +lt ++++rp sgsl+L+n++++++frkDG++w++k+dg+++ E+he+LKvg+ e+l+cyYah+e+
  Cagra.1125s0011.1.p  11 YQEaRTRWLKPPEVQFILQNHERLKLTDTAPQRPASGSLFLFNKRVLKFFRKDGHQWRRKRDGRAIAEAHERLKVGNAEALNCYYAHGEH 100
                          56779************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylev 117
                          +ptf+rr+yw+L+ e+e+ivlvhy++v
  Cagra.1125s0011.1.p 101 DPTFRRRIYWMLDPEYEHIVLVHYRDV 127
                          *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.3697133IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7810128IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-4613127IPR005559CG-1 DNA-binding domain
PfamPF018336.9E-8423506IPR002909IPT domain
Gene3DG3DSA:2.60.40.103.2E-8423510IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.74E-17423507IPR014756Immunoglobulin E-set
CDDcd001022.51E-7423508No hitNo description
SuperFamilySSF484031.48E-16606714IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-15607714IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.406619711IPR020683Ankyrin repeat-containing domain
CDDcd002041.56E-13624711No hitNo description
PfamPF127963.2E-8640712IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0021652681IPR002110Ankyrin repeat
PROSITE profilePS5008810.766652684IPR002110Ankyrin repeat
SMARTSM002481300691720IPR002110Ankyrin repeat
SMARTSM0001581769791IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638770798IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-9770878IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.51826848IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627827856IPR000048IQ motif, EF-hand binding site
PfamPF006120.0042828847IPR000048IQ motif, EF-hand binding site
SMARTSM000155.4E-5849871IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.865850874IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4852871IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MQSEYDIGTL YQEARTRWLK PPEVQFILQN HERLKLTDTA PQRPASGSLF LFNKRVLKFF  60
RKDGHQWRRK RDGRAIAEAH ERLKVGNAEA LNCYYAHGEH DPTFRRRIYW MLDPEYEHIV  120
LVHYRDVSDR EEGNQTNGQV YQFAPVPTTL FSSPNSIGTQ NASYNHYIGD STDIHQHSST  180
SHGTAEVISE LEGSASSSEL GQALKKLKEQ LSIGDEHVDS IDPPYIQPES LDSLQFLGCS  240
NDIDHLPQPT TRYQRPENNK LERCYGGNFG AQYNAKNDSN KLERCYGGYV GAQDRSSNLM  300
LVKNDSGGTG GSVDEGSGSW KDVLEACEAT IPHNSEGSTP SSAKGILAGM QEDSNWSYSN  360
QVDQSTFLLP QDLGSFEVPA SYSALGAPEN NGEYCPMMDD GGEFELPFEQ EMSQTGAHQL  420
KFTIQDISPE WGYVNETTKV IIIGSFLCDP AESMWSCMFG SAKVPIEIIK EGVIRCKAPP  480
CGPGKVNLCV TSADGLSCSE IREFEYRDKP DTSCLKCTLS QTSDMSTSTD QLLLLVKFVQ  540
TLMSDQRSEG ESNSELGNDK RLKKLKADDD QWTRVIGEIR DGSSSSTRRV DWLLQELLKD  600
KLEAWLSSRS KDRDSWSKQE QCIIHMIAGL GFEWALYPIL GHGVSVDFRD INGWSALHWA  660
ARFGSEKMVA ALIASGASAG AVTDPSQQDP NGKTAASIAA SNGHKGIAGY LSEVALTNHL  720
SSLTLGETEI SKDSAQVQAE ITVNSISEPG PSDNEDQISL EKTLAAVRNA AQAATRIQEA  780
FRAHSFRKRK QREAAMAACL QEYGIYCEDI EGISAMSKLT FGNVKNYHSA ALSIQKKYRG  840
YKGRKEFLEL RQKVVKIQAH VRGYQIRKHY KVICWAVGVL DKVVLRWRRK GAGLRGFRQD  900
VETTEDSEDE DILKVFRKQK VDGAVNEAFS RVLSMANSPE ARQQYHRVLK RYCQTKAELG  960
KTETLIGDDD DGLFDIADME FNSLFTLP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1125s0011.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5100260.0AY510026.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023643087.10.0calmodulin-binding transcription activator 4 isoform X1
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLR0GG070.0R0GG07_9BRAS; Uncharacterized protein
STRINGCagra.1125s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]