PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.11216s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 228aa    MW: 25509.2 Da    PI: 6.9604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.11216s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-172168148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Cagra.11216s0001.1.p 21 KGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYL 68
                          79********************************************97 PP
2Myb_DNA-binding53.94e-1774117146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++
  Cagra.11216s0001.1.p  74 RGNITPEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 117
                           7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9981668IPR017930Myb domain
SuperFamilySSF466897.49E-3019115IPR009057Homeodomain-like
SMARTSM007171.8E-122070IPR001005SANT/Myb domain
PfamPF002491.9E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-232275IPR009057Homeodomain-like
CDDcd001672.14E-102368No hitNo description
PROSITE profilePS5129424.86569123IPR017930Myb domain
SMARTSM007175.0E-1573121IPR001005SANT/Myb domain
PfamPF002497.1E-1674117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2476122IPR009057Homeodomain-like
CDDcd001673.14E-1278117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEKRGGSSGG SGSSVEAEVR KGPWTMEEDL ILINYIANHG DGVWNSLAKS AGLKRTGKSC  60
RLRWLNYLRP DVRRGNITPE EQLIIMELHA KWGNRWSKIA KHLPGRTDNE IKNFWRTRIQ  120
KYIKQADATT TSSVGSHHSS EINDQAASTS SHNVFCTQDQ AMETYSPTPT SYQQHTNMEF  180
NYGGNYSAAA TTTTVDYPIP MTVDDQTGEN YWGMDDIWSS MHLLNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261812324128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.11216s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1184390.0AK118439.1 Arabidopsis thaliana At3g27810 mRNA for putative myb family transcription factor (Atmyb3), complete cds, clone: RAFL19-68-M03.
GenBankAY5195890.0AY519589.1 Arabidopsis thaliana MYB transcription factor (At3g27810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006292470.11e-172transcription factor MYB21
SwissprotQ9LK951e-154MYB21_ARATH; Transcription factor MYB21
TrEMBLR0HN701e-170R0HN70_9BRAS; Uncharacterized protein
STRINGCagra.11216s0001.1.p1e-171(Capsella grandiflora)
STRINGXP_006292470.11e-171(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-145myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]