PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1085s0054.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bZIP | ||||||||
Protein Properties | Length: 365aa MW: 41736.2 Da PI: 7.2232 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.3 | 1.2e-11 | 78 | 110 | 3 | 35 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 ++k +rr+++NReAAr+sR+RKka++++Le+ Cagra.1085s0054.2.p 78 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 110 6899*************************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-5 | 76 | 136 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.634 | 78 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.3E-9 | 78 | 108 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.25E-7 | 80 | 114 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.7E-7 | 81 | 121 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.2E-30 | 166 | 241 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MNTTSTHFVP QRRFETYEPL NQIGMWEESF KNNEGLYTPG SILIPTNEKT DSLSEDTSHG 60 AEGTPHKFDQ EASTSRHPDK IQRRLAQNRE AARKSRLRKK AYVQQLETSR LKLIHLEQEL 120 DRARQQGFYV GNGVESSALG FSDNMSSGIV AFEMEYGHWV EEQNRQICEL RTVLHGHVSD 180 IELRSLVENA MKHYFQLFRM KSTAAKIDVF YVMSGMWKTS AERFFLWIGG FRPSELLKVL 240 LPHFDPLTDQ QLLDVCNLKQ SCQQAEDALS QGMEKLQHTL AESVAAGRLG EGSYIPQMTC 300 AMERLEALVS FVNQADHLRH ETLQQMHRIL TTRQAARGLL ALGEYFQRLR ALSSSWAARQ 360 REPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00502 | DAP | Transfer from AT5G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1085s0054.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229351 | 0.0 | AK229351.1 Arabidopsis thaliana mRNA for bZip transcription factor OBF4 / AtbZip57, complete cds, clone: RAFL16-60-A10. | |||
GenBank | BT024896 | 0.0 | BT024896.1 Arabidopsis thaliana At5g10030 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023637284.1 | 0.0 | transcription factor TGA4 isoform X1 | ||||
Refseq | XP_023637285.1 | 0.0 | transcription factor TGA4 isoform X1 | ||||
Refseq | XP_023637286.1 | 0.0 | transcription factor TGA4 isoform X1 | ||||
Swissprot | Q39162 | 0.0 | TGA4_ARATH; Transcription factor TGA4 | ||||
TrEMBL | Q24JJ3 | 0.0 | Q24JJ3_ARATH; At5g10030 | ||||
STRING | Cagra.1085s0054.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10030.2 | 0.0 | TGACG motif-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1085s0054.2.p |
Publications ? help Back to Top | |||
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