PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1085s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family AP2
Protein Properties Length: 599aa    MW: 66892.9 Da    PI: 6.8449
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1085s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.7e-10286342155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k+++
  Cagra.1085s0008.1.p 286 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 342
                          57*******************4444.2344336655.7799999*************97 PP
2AP249.61e-15385436155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Cagra.1085s0008.1.p 385 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 436
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-8286342IPR001471AP2/ERF domain
CDDcd000182.41E-17286352No hitNo description
SuperFamilySSF541711.63E-13286351IPR016177DNA-binding domain
PROSITE profilePS5103216.753287350IPR001471AP2/ERF domain
SMARTSM003801.8E-18287356IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-10287350IPR001471AP2/ERF domain
PRINTSPR003675.6E-6288299IPR001471AP2/ERF domain
PfamPF008474.2E-10385436IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17385445IPR016177DNA-binding domain
CDDcd000183.62E-11385444No hitNo description
PROSITE profilePS5103219.111386444IPR001471AP2/ERF domain
SMARTSM003807.9E-31386450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-18386444IPR001471AP2/ERF domain
PRINTSPR003675.6E-6426446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE  60
AQLAAASMAD STILTTFVDP QSHHSQNHIP KLEDFLGDSS SIVRYSDNSQ TETQDSSLTQ  120
IYDPRHHHHP NQNQNQNHHN QTGFYSDHHD FKTMAGFQTA FSTNSGSEVD DSASIGRTHL  180
AGEYLGHVVE SSGPELGFHG GSNTANGGAL SLGVNVNSTN HRNENDSNQV TNHHYRGVNN  240
GGERNNNSNN NENEKTDSEK EKPIVAVETS DCSNKKIADT FGQRTSIYRG VTRHRWTGRY  300
EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WNATATTNFP ITNYSKELEE  360
MKHMTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  420
EEAAEAYDIA AIKFRGINAV TNFEMNRYDV EAIMKSALPI GGAAKRLKLS LEAASSEQKP  480
ILGHQLHHFQ QQQQQQQQQQ QLQSSPNHSS INFALCPNSA VQSQQIIPCG IPFEAAALYH  540
HQQQQQQQQQ QQQNFFQHFP ANAASDSTGS NNNSNVQGSM GLMAPNPAEF FLWPNPSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1085s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023635960.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLD7M2X90.0D7M2X9_ARALL; Uncharacterized protein
STRINGCagra.1085s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]