PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.10702s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 304aa    MW: 34499.5 Da    PI: 6.1721
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.10702s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181562148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Cagra.10702s0006.1.p 15 KGLWSPEEDEKLLNYITKHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 62
                          678*******************************************97 PP
2Myb_DNA-binding46.21e-1468111146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg+++ eE++l+v++++ lG++ W+ Ia++++ gRt++++k+ w++
  Cagra.10702s0006.1.p  68 RGAFSSEEQDLIVELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 111
                           89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-27765IPR009057Homeodomain-like
PROSITE profilePS5129425.1881066IPR017930Myb domain
SuperFamilySSF466892.66E-3013109IPR009057Homeodomain-like
SMARTSM007175.6E-131464IPR001005SANT/Myb domain
PfamPF002491.5E-161562IPR001005SANT/Myb domain
CDDcd001672.09E-111862No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2566117IPR009057Homeodomain-like
PROSITE profilePS5129419.75467117IPR017930Myb domain
SMARTSM007175.5E-1267115IPR001005SANT/Myb domain
PfamPF002493.4E-1368111IPR001005SANT/Myb domain
CDDcd001671.27E-870110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRSHSCCYK QKLRKGLWSP EEDEKLLNYI TKHGHGSWSS VPKLAGLQRC GKSCRLRWIN  60
YLRPDLKRGA FSSEEQDLIV ELHAVLGNRW SQIAARLPGR TDNEIKNLWN SCIKKKLRQK  120
GIDPITHKPL SEVDGDTNIS FNHSSTSFSS ETNQDFFVKE PSDFSDYLAF QKQDTNSVPQ  180
SSMIDGSSVS ISGFETQSYV KSSIPPQDNT SSTISGEDHV QVIEPTWESN FGSRITSYLD  240
NPSLEEMKWS EEYLNESLFL NPVYVKSETD FDSNIAFPWS QSQACDVIPK DLQRMVFSFG  300
QTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.10702s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5503041e-166AY550304.1 Arabidopsis thaliana MYB transcription factor (At1g57557) mRNA, complete cds.
GenBankBT0292251e-166BT029225.1 Arabidopsis thaliana At1g57560 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302609.10.0transcription factor MYB61
SwissprotQ8VZQ21e-120MYB61_ARATH; Transcription factor MYB61
TrEMBLR0GI250.0R0GI25_9BRAS; Uncharacterized protein
STRINGCagra.10702s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.11e-162myb domain protein 50
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]