PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1062s0034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 247aa MW: 27484.3 Da PI: 8.5671 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.2 | 4.8e-35 | 21 | 76 | 5 | 60 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + cprCds+ntkfCyynnys sqPryfCk+CrryWt+GGalr++P+Gg +r k+ Cagra.1062s0034.1.p 21 PRVCPRCDSDNTKFCYYNNYSQSQPRYFCKKCRRYWTHGGALRDIPIGGRCRTPKR 76 678*************************************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.1E-31 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.4 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MANLNVSAKE NNQVNEEKPP PRVCPRCDSD NTKFCYYNNY SQSQPRYFCK KCRRYWTHGG 60 ALRDIPIGGR CRTPKRPRIE QSSVSLMVSI ENQPGNNHQP LRHVQENNRF LGSFGGSSTS 120 SVATSIVGNQ FGYMTEVHSV SVTNVPPGRS FRPILLERLD FGEEPYQQGF YDVGTNDLIG 180 NPFINQSIGE YVGNLNSYGI NQSSFNNTMN GHHEASSSGS RGSSGTEMND DDNKKKIGSN 240 FFFRSA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1062s0034.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006282805.1 | 1e-162 | dof zinc finger protein DOF4.4 isoform X1 | ||||
Swissprot | Q9SUA9 | 1e-89 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | R0GX21 | 1e-161 | R0GX21_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1062s0034.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21050.1 | 2e-85 | Dof-type zinc finger domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1062s0034.1.p |