PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.10413s0004.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | Dof | ||||||||
Protein Properties | Length: 461aa MW: 50824.3 Da PI: 6.2975 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126 | 1.1e-39 | 117 | 177 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+ss Cagra.10413s0004.1.p 117 PTKILPCPRCKSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSS 177 67899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-31 | 114 | 174 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.3E-32 | 119 | 175 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.649 | 121 | 175 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 123 | 159 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MMMESRDPAI KLFGMKIPFP AVIESPPVTV DEEEEEEDDW SGGDGGDDKS SEDNKVILEL 60 PDKNCNDNSL NNSNESKPET GDKEEETTST DQIESSDSPD DGSNQQTTAD GKVLKKPTKI 120 LPCPRCKSMD TKFCYYNNYN INQPRHFCKA CQRYWTAGGT MRNVPVGAGR RKNKSSSSHY 180 RHITISEALE AARLDPGLQA NTRVLSFGLD AHQQHAAAPM APVMKLQGNQ KVSNGAQNVF 240 HGLADQRLVA RVENGDDCSS GSSVTTSNNH SVDESKPQSC RVGEPQMNNN NNMNGYACIP 300 GVPWPYTWNP SMPPPGFYPP PGFPMPFYPY WTIPMVSPHQ SSSPMSQKAS NPNSPTLGKH 360 PRDEESARKD NETEQRKQRN GVLVPKTLRI DDPNEAAKSS IWTTLGIKND GMMSKGGGMF 420 KGFDEQKTKM NNNNDKTENS PLRSANPAAL SRSHNFHERV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.10413s0004.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084628 | 0.0 | AY084628.1 Arabidopsis thaliana clone 113639 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291025.2 | 0.0 | cyclic dof factor 3 | ||||
Swissprot | Q8LFV3 | 0.0 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | R0HJB1 | 0.0 | R0HJB1_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.10413s0004.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5441 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 0.0 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.10413s0004.1.p |
Publications ? help Back to Top | |||
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