PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.1036s0044.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | WRKY | ||||||||
Protein Properties | Length: 560aa MW: 60249.3 Da PI: 7.0357 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 6.9e-30 | 235 | 294 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ Cagra.1036s0044.1.p 235 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 294 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-31 | 220 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-27 | 228 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.69 | 230 | 296 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-37 | 235 | 295 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-27 | 236 | 294 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MEVLLKLPIS DSPLKDKVFG SVQIHEATKG DGDDHQELES AKAEMSEVKE ENEKLKGMLE 60 RIESDYKSLK LRFFDIIQQE PSNNPSQSQN MVDHRKPTTT DLSSFDQERE LVSLSLGRRS 120 SSPSNSISKK EEKDAKSAES NADKELTKAG LTLGINNGDG RESNMSLSIE NPANSSLENS 180 AEETPGETWP PSKVTGKRSS PTPAPGGDVD GEAGQQNHVK RARVCVRARC DTPTMNDGCQ 240 WRKYGQKIAK GNPCPRAYYR CTVAPGCPVR KQVQRCADDM SILITTYEGT HSHPLPLSAT 300 TMASTTSAAA SMLLSGSSSS SAAELVGNNL YDNSRFNNNN NNNKSFYSPT LHSPLHPTVT 360 LDLTAPQHPS SSSLPSLNFN KFSNSFQRFP PTSLNFSSNA SSSSSNSSNL NLPAIWGNGY 420 SSYTPYPYNN VQFGTSSLGK TVQNSQSLTE TLTKALTSDP SFHSVIAAAI STMVGSNGEQ 480 QIAGPRNLNS NNIQQTTTTN NNKGCGGYFS SLLMSNIMAS TQTGASSDQP SSQLPPFSMF 540 KNSSSSSSTT SFANKDEKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-21 | 222 | 296 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.1036s0044.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006287400.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Swissprot | Q9LXG8 | 0.0 | WRK72_ARATH; Probable WRKY transcription factor 72 | ||||
TrEMBL | R0H9M0 | 0.0 | R0H9M0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1036s0044.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2959 | 28 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 0.0 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.1036s0044.1.p |