PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1036s0035.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 269aa    MW: 28641.1 Da    PI: 8.5042
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1036s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.21.7e-3253109358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                           v+YkeClkNhAa +Ggha+DGCgEfmps+  + +++++l+CaACgCHRnFHRre +
  Cagra.1036s0035.1.p  53 VVTYKECLKNHAAGIGGHALDGCGEFMPSPAFNsNDPTTLTCAACGCHRNFHRREDD 109
                          689***************************999889******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2847107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2754108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.2E-3155107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.92656107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.51E-19166237IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28169236IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-24179235IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDVIATTTTI VSDLDSRQPE IEAPTRIHPA KPISFSNGKR CHHNHLASEA AAVVTYKECL  60
KNHAAGIGGH ALDGCGEFMP SPAFNSNDPT TLTCAACGCH RNFHRREDDP SLASAIVPAI  120
EFRPQNRHQL PPPHPVGIRS PDDDDSASPP PISSSYMLLA LSGGGGGGGG GNTAGPMSRK  180
RFRTKFSQYQ KEKMFEFAER VGWRMPKADD VAVKEFCREI GVDKSVFKVW MHNNKISGRG  240
GAKRANGGGG GGDSRESVVP TNGSFSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-231782381676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1036s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3539930.0AL353993.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project).
GenBankBT0121950.0BT012195.1 Arabidopsis thaliana At5g15210 gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290001.11e-172zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-161ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLR0H1071e-170R0H107_9BRAS; Uncharacterized protein
STRINGCagra.1036s0035.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-146homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]