PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1033s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GeBP
Protein Properties Length: 284aa    MW: 32025.1 Da    PI: 5.7876
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1033s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57363.16.7e-2090178597
               DUF573   5 rlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                          +lw +eDe++lLqG+i +k+ t ++  +   +++y+f+k+sisf+vs +q + Ki   + K++kk +    gk+ps   ++d k+fel++
  Cagra.1033s0003.1.p  90 QLWRKEDELLLLQGIIRCKTGTSTKFNHkVREEIYNFIKGSISFEVSLKQCTAKIHAVRSKYQKKLDS---GKKPS--GAQDLKAFELAE 174
                          79****************999998554427899*******************************9999...77765..56777******* PP

               DUF573  94 kiWg 97 
                           iWg
  Cagra.1033s0003.1.p 175 EIWG 178
                          ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-1790178IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVKQKDSGKT SSEEEEEDSG EASSEEDEAS SENEEPTKEQ TPSKAAEKAK EKEICVSGKG  60
QKRVSEGTSS QDMSAAKKVK PSVKKLVPPQ LWRKEDELLL LQGIIRCKTG TSTKFNHKVR  120
EEIYNFIKGS ISFEVSLKQC TAKIHAVRSK YQKKLDSGKK PSGAQDLKAF ELAEEIWGLS  180
GTSDAMESRK SERIQKLEEE KDVMIHEHGE DWFKNSVLYR VVTILGMEKD RVIKNWSYVA  240
EEEKKIMLDR WSDLEAKDAE IVNQKTVYVH DLISVILEAS PSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1033s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285244.11e-143probable transcription factor At1g61730
TrEMBLR0F8A51e-142R0F8A5_9BRAS; Uncharacterized protein
STRINGCagra.1033s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2048245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-28DNA-binding storekeeper protein-related transcriptional regulator