PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.1013s0036.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 564aa    MW: 62843.1 Da    PI: 6.2538
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.1013s0036.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-09452500348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v ++G g W+ I ++       Rt  ++k++w+++l
  Cagra.1013s0036.1.p 452 AWTLTEVTKLVEGVSKYGAGKWSEIKKHSFssySYRTSVDLKDKWRNLL 500
                          7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.438445504IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-14447506IPR009057Homeodomain-like
SMARTSM007179.3E-10449502IPR001005SANT/Myb domain
CDDcd116603.77E-21451501No hitNo description
SuperFamilySSF466892.02E-16451510IPR009057Homeodomain-like
PfamPF002493.0E-7452500IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MHIASDSCET VGYLSAEGMP SGLSQFENSE AMNSGLLQSD NVPPYIDQYN EEMLQKVEQD  60
ERLGNVHGSQ MPSTPSDANI QCSNEDTFNK EDQVHHEALL QEPISLSSNV ENECNMNQPD  120
MIEPCSNAAA SPKETALSVT AQKPDFSRVR GDICLDNLPI KALQETFRAT FGRETTVKDK  180
TWLKRRIAMG LINSCDVPAT NLTIKDNKLV GNQEKSNVMT NVISKDMGDD VRAAKPKDAP  240
SSIDHVNASD HYYASEDYSS EQRAAKRVRK PTRRYIEELS ETDEKQQNDK SMIPSKDQRL  300
SEKPEVRSIS VSSGKRVAVT RMVSLAGSEI EVPYVSHVRR SRPRENIMAL MDCHSSCLEN  360
RASPAESNFS LTPSQLNNEV VKRDLVVKSA SRPVQKEVAT SHKNNEEPIL SEVDQDTEPE  420
HIDSSGNSSD DNNNMDVSIM QGGALRRKHH RAWTLTEVTK LVEGVSKYGA GKWSEIKKHS  480
FSSYSYRTSV DLKDKWRNLL KASFAQSPSN SMGSLKKHGS MHIPMQILSR VRELVEMQSL  540
VPPVSKVGGD SNRRERETRS DIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.1013s0036.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0456280.0AY045628.1 Arabidopsis thaliana At1g72650/F28P22_16 mRNA, complete cds.
GenBankAY0845300.0AY084530.1 Arabidopsis thaliana clone 110945 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300624.10.0uncharacterized protein LOC17894921 isoform X2
TrEMBLR0GCR00.0R0GCR0_9BRAS; Uncharacterized protein
STRINGCagra.1013s0036.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.10.0TRF-like 6