PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cagra.0995s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 197aa MW: 21318 Da PI: 8.5077 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80 | 2.7e-25 | 20 | 72 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 p l+Wtp+LH+rFv+av++L G+++ +P+ti++lm+v+gLt+e+v+ HLQ YRl Cagra.0995s0002.1.p 20 PCLVWTPQLHKRFVDAVAHL-GIKNEVPQTIMQLMSVDGLTRENVANHLQNYRL 72 5689****************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-16 | 16 | 76 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 18 | 77 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-19 | 22 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-7 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 197 aa Download sequence Send to blast |
SADLGSGAAG DEPARTLKRP CLVWTPQLHK RFVDAVAHLG IKNEVPQTIM QLMSVDGLTR 60 ENVANHLQNY RLYLKRMQGL SSGGGAGSDP AIDRLFASSP ASAHFLHPNR VPSSDHFMPS 120 FVLVATLQQQ QQMAAAANPH LQPPQFYHRQ IAAAHIGSPT NWGFHSPTIG NYAEDLESAN 180 ANGGRTVLTL FPTRDY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-30 | 19 | 75 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Cagra.0995s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | ATAC011708 | 1e-121 | AC011708.8 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-121 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006298091.1 | 1e-100 | transcription factor MYBC1 | ||||
Swissprot | O22210 | 1e-49 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | R0HX89 | 1e-139 | R0HX89_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.0995s0002.1.p | 1e-144 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1549 | 27 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G10760.1 | 2e-94 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Cagra.0995s0002.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|