PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0926s0034.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | BES1 | ||||||||
Protein Properties | Length: 280aa MW: 30265.8 Da PI: 9.9239 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 204.8 | 2.4e-63 | 15 | 154 | 2 | 145 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 + gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+ ++ p+ Cagra.0926s0034.1.p 15 AMGRTPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPM---------DTTPPC 95 789************************************************************************.........8899** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145 ss+q+s++ssa++sp++sy+asp+sss+psp+++d+i+++ + + l+p+l++l++ Cagra.0926s0034.1.p 96 SSIQLSPQSSAFQSPIPSYQASPASSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 154 ************************************98764456666888888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.9E-60 | 16 | 152 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MTASGGGGGG GSTAAMGRTP TWKERENNKR RERRRRAIAA KIFTGLRSQG NYKLPKHCDN 60 NEVLKALCLE AGWIVHEDGT TYRKGSRPMD TTPPCSSIQL SPQSSAFQSP IPSYQASPAS 120 SSYPSPTRFD HIPNRFDPNQ SSTYLIPYLQ NLASSGNLAP LRISNSAPVT PPLSSPRGSA 180 PRLPKWQSSN FPVSAPSSPT RRLRHYTSIP ECDESDVSTV DSCRWGSFKP VNVSQTCPPS 240 PTFNLVGNVS VKPWEGEKIH DVGVDDLELT LGNNAKGRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-25 | 18 | 89 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0926s0034.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002452 | 1e-127 | BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds. | |||
GenBank | BT006310 | 1e-127 | BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006291639.1 | 1e-162 | BES1/BZR1 homolog protein 1 | ||||
Swissprot | Q9S7F3 | 1e-149 | BEH1_ARATH; BES1/BZR1 homolog protein 1 | ||||
TrEMBL | R0FPV1 | 1e-160 | R0FPV1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0926s0034.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14467 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50750.1 | 1e-135 | BES1/BZR1 homolog 1 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0926s0034.1.p |