PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0925s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 582aa    MW: 64043.2 Da    PI: 7.5656
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0925s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.9e-08256276526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C+ Gd+C +aHg
  Cagra.0925s0010.1.p 256 PCPEFRK-GSCPKGDSCEYAHG 276
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.17E-1230174IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.37172181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01172102IPR002110Ankyrin repeat
PfamPF136379.5E-573125No hitNo description
Gene3DG3DSA:1.25.40.204.5E-1373174IPR020683Ankyrin repeat-containing domain
CDDcd002048.07E-1174153No hitNo description
SMARTSM0024823107142IPR002110Ankyrin repeat
SMARTSM003566.3E-5251277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976251278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-6256277IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5256276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4283315IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812286310IPR000571Zinc finger, CCCH-type
SMARTSM0035643286309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MCSGPKSNLC SSRILTEIES RQKEEDTMVL LEFAACDDLD SFKRDVEEKG LDLDEPGLWY  60
CSRVGSRKMG LEERTPLMVA AMYGSIKVLT FIVSTGRSDV NRACGQERVT ALHCAVAGCS  120
VNLIEVINVL VDASALVSSV DANGNQPLDV FVRVSRFVAS PRRKAVEMLL RGGALGGLID  180
EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE  240
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR  300
KVCFFAHKRE EMRPVNASTG SAVAQSPFSS VEMMPGLSPL AYSSGISTPP VSPMANGGPS  360
SPRNGGSWQN RVNTLTPPAL QLNGGSRLKS TLSARDIDME MEMELRLRGF GNNVEETFGS  420
YVSSPSRNSQ MGQNMNQHYP SSPVRQPPPH HGFDSSAAAA VAVMKARSSA FAKRSLSFKP  480
ATQATQQSNL SDWGSPNGKL EWGVKGEELN KMRRSVSFGI HGNNNNNNNA ARDYRDEPDV  540
SWVNSLVKDS VVPERSFGMN QRVQIMSWAE QMYREKEQTV A*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0925s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2268610.0AK226861.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL08-18-O11.
GenBankAL1638320.0AL163832.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19.
GenBankAY0562820.0AY056282.1 Arabidopsis thaliana unknown protein (At3g55980) mRNA, complete cds.
GenBankBT0086250.0BT008625.1 Arabidopsis thaliana clone RAFL09-89-N11 (R19914) unknown protein (At3g55980) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290794.20.0zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLR0FMJ30.0R0FMJ3_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0925s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]