PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0917s0035.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | AP2 | ||||||||
Protein Properties | Length: 491aa MW: 54299.8 Da PI: 6.6814 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.2 | 1.3e-10 | 231 | 288 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++gr++A+++d + rk + g ++ +++Aa+a++ a++k++g+ Cagra.0917s0035.1.p 231 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWGH 288 57*******************4444.2344336655.7799999*************997 PP | |||||||
2 | AP2 | 50.8 | 4.2e-16 | 330 | 381 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Cagra.0917s0035.1.p 330 SVYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 381 78****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-8 | 231 | 288 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-14 | 231 | 296 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.96E-18 | 231 | 297 | No hit | No description |
PROSITE profile | PS51032 | 17.214 | 232 | 295 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-11 | 232 | 296 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.8E-20 | 232 | 301 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 233 | 244 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-10 | 330 | 381 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.97E-11 | 330 | 389 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 330 | 390 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-18 | 331 | 389 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 331 | 389 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-30 | 331 | 395 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 371 | 391 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MAPPPMTNWL TFSRSPMELL KSPDHAHFPS SFDASSTPFL LDNFYEEAEI EAAASMADST 60 TLSTYFDSQI HSQTQIPKLE DFLGDSFVRY SDNQTETQDS SSSLTRFYDL SHHTVTGGGV 120 TAFFSDHHDF KAVNSGSEIV DDSASNIVGT HLSGHAVVKS SSTTAELGFN GGATTGEALS 180 LAVNNTSDQP LSCDNGERRE NSKKMKTTVS KKETSDDSKK KVVEPLGQRT SIYRGVTRHR 240 WTGRYEAHLW DNSCRREGQA RKGRQGGYDK EDKAARAYDL AALKYWGHTA TTNFPAASYS 300 KEVEDMNHMT KQEFIASLRR KSSGFSRGAS VYRGVTRHHQ QGRWQARIGR VAGNKDLYLG 360 TFATEEEAAE AYDIAAIKFR GINAVTNFEM NRYDVEAVMK SSFPVGNSAK RHKLAVESPP 420 SSDHNLQQPL LPSSSSSDVN PNSIPCGIPF ESSVLYHHQN FFQHYPLASD STVQAPMNPA 480 EFFLWTNPSY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00589 | DAP | Transfer from AT5G65510 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0917s0035.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560887 | 0.0 | AY560887.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g65510) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636767.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Refseq | XP_023636770.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 isoform X1 | ||||
Swissprot | Q6J9N8 | 0.0 | AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7 | ||||
TrEMBL | R0EWM6 | 0.0 | R0EWM6_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0917s0035.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3333 | 27 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65510.1 | 0.0 | AINTEGUMENTA-like 7 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0917s0035.1.p |
Publications ? help Back to Top | |||
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