PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0917s0028.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 319aa MW: 35042.9 Da PI: 9.0269

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0917s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9e-39	38	97	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks Cagra.0917s0028.1.p 38 DQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 97 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-35	25	95	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010052	Biological Process	guard cell differentiation
GO:0010118	Biological Process	stomatal movement
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:1902066	Biological Process	regulation of cell wall pectin metabolic process
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MSSHTNLPSP KPFPKPDHRI SAGTSQTKKQ PSSSVAQDQQ TLKCPRCNSP NTKFCYYNNY 60 SLSQPRHFCK SCRRYWTRGG ALRNVPIGGG CRKTKKSIKP SSSMSALPSS SSSSQRFFSS 120 IMDDSSKFFP PPTTMDFQLA GLSLNKINDL QLLNNQEVLD LRPMISSGRE NTPVDVGSGL 180 SLMGFGDYNN NHSPTAFTTA GANDGNLASS IETLSCLNQD LHWRLQQQRM AMLFGNSKEE 240 TVVVERPQPI LYRNLEIVNS SSPSSPTKKG DNQTEWYFGN NNDNDGVISN NGNSGGGSEW 300 NNNGIQAWTD LNHYNALP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0917s0028.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026639	0.0	AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023640922.1	0.0	dof zinc finger protein DOF5.7
Swissprot	Q9LSL6	0.0	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	R0GMZ5	0.0	R0GMZ5_9BRAS; Uncharacterized protein
STRING	Cagra.0917s0028.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-179	Dof family protein

Link Out ? help Back to Top
Phytozome	Cagra.0917s0028.1.p

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]