PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0906s0019.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 398aa    MW: 44625.7 Da    PI: 6.2035
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0906s0019.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.3e-344599155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl
  Cagra.0906s0019.3.p 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.15542102IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-3243100IPR009057Homeodomain-like
SuperFamilySSF466892.51E-1744100IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-2445100IPR006447Myb domain, plants
PfamPF002491.0E-104798IPR001005SANT/Myb domain
PfamPF143791.0E-15146186IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MYYHNQHQGK SILSSSRMPI TSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSG LNKTSVMTMV  120
EENLPEADEG HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLELRIE AQGKYLQSIL  180
EKAQETLGRQ NLGAAGIEAT KAQLSELVSK VSAEYPDSSF LEAKEVQNLR HQQMQTTYPP  240
NSSLDSCLTS SEGTQKAPKM LENRLGLRTY IGDSTSEQKE VMEEPFFRRM ELTWAEEESL  300
RENNNRPYLS TMVNNTEPRN SSSRRSPGRL SMGVGLHEHR EGSGNNSEYA EERFNENGED  360
CKLETHTGTT LDLNTHDENY GTTTRPKQFD LNGFSWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-2145101157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0906s0019.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2918170.0AF291817.1 Arabidopsis thaliana MYR1 (MYR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023636836.10.0myb-related protein 1 isoform X3
SwissprotQ9FK470.0PHLA_ARATH; Myb-related protein 1
TrEMBLR0HAX90.0R0HAX9_9BRAS; Uncharacterized protein
STRINGCagra.0906s0019.1.p0.0(Capsella grandiflora)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.30.0myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]