PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0906s0019.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 404aa MW: 45387.6 Da PI: 6.4023

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0906s0019.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.3	8.5e-34	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG +kAtPkti+++m+++gLtl+h+kSHLQkYRl Cagra.0906s0019.1.p 45 KPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.155	42	102	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.7E-32	43	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-17	44	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.6E-24	45	100	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-10	47	98	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-25	146	192	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MYYHNQHQGK SILSSSRMPI TSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE 60 AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSG LNKTSVMTMV 120 EENLPEADEG HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK 180 YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEAK EVQNLRHQQM 240 QTTYPPNSSL DSCLTSSEGT QKAPKMLENR LGLRTYIGDS TSEQKEVMEE PFFRRMELTW 300 AEEESLRENN NRPYLSTMVN NTEPRNSSSR RSPGRLSMGV GLHEHREGSG NNSEYAEERF 360 NENGEDCKLE THTGTTLDLN THDENYGTTT RPKQFDLNGF SWN*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MYYHNQHQGK SILSSSRMPI TSERHPFLRG NGTGDSGLIL STDAKPRLKW TPDLHERFVE  60
AVNQLGGGDK ATPKTIMKVM GIPGLTLYHL KSHLQKYRLS KNLNGQASSG LNKTSVMTMV  120
EENLPEADEG HSESLSIGPQ PSMNLPISDA LQMQIEVQRR LHEQLEVQRH LQLRIEAQGK  180
YLQSILEKAQ ETLGRQNLGA AGIEATKAQL SELVSKVSAE YPDSSFLEAK EVQNLRHQQM  240
QTTYPPNSSL DSCLTSSEGT QKAPKMLENR LGLRTYIGDS TSEQKEVMEE PFFRRMELTW  300
AEEESLRENN NRPYLSTMVN NTEPRNSSSR RSPGRLSMGV GLHEHREGSG NNSEYAEERF  360
NENGEDCKLE THTGTTLDLN THDENYGTTT RPKQFDLNGF SWN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	45	101	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	45	101	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0906s0019.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT003421	0.0	BT003421.1 Arabidopsis thaliana transfactor-like protein (At5g18240) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023636833.1	0.0	myb-related protein 1 isoform X1
Refseq	XP_023636834.1	0.0	myb-related protein 1 isoform X1
Swissprot	Q9FK47	0.0	PHLA_ARATH; Myb-related protein 1
TrEMBL	R0GV47	0.0	R0GV47_9BRAS; Uncharacterized protein
STRING	Cagra.0906s0019.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	0.0	myb-related protein 1

Link Out ? help Back to Top
Phytozome	Cagra.0906s0019.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]