PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0878s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 269aa    MW: 30773.7 Da    PI: 9.5091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0878s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.27e-1490139152
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          ++ +hn+ Er RR+++N  ++ Lr llP+a   +++Kls  +++ ++v+YI 
  Cagra.0878s0006.1.p  90 KKLNHNASERDRRRKLNALYSSLRALLPPA--DQKRKLSIPMTVARVVKYIP 139
                          6789*************************6..49999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1289160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-1189146No hitNo description
PROSITE profilePS5088814.11389141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-1190139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1090146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-995147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MCALTPIFPT SKRQEWYSAS TMENPWLQSD QEYSFPTTLQ YLPSLLYPSF TQSDESKNYH  60
NINMSLSHSN GSNSNSNNDQ EEDRGTLLEK KLNHNASERD RRRKLNALYS SLRALLPPAD  120
QKRKLSIPMT VARVVKYIPE QKQELQRLSR RKVELLKRIS RKTHQEQLRN KETLDSIDSS  180
SSQRIVANWL SDTEIAVQIA TSKWTSVSDM LLRLEGNGLH VISVSSSVSS TARIFSTLHL  240
QMIGDCKVRL EELINGICSW NYASHNER*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0878s0006.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:17516080}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5198100.0AJ519810.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288475.11e-165transcription factor bHLH101
SwissprotQ9FYE61e-104BH101_ARATH; Transcription factor bHLH101
TrEMBLR0HCG71e-164R0HCG7_9BRAS; Uncharacterized protein
STRINGCagra.0878s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.11e-104bHLH family protein
Publications ? help Back to Top
  1. Maurer F,Naranjo Arcos MA,Bauer P
    Responses of a triple mutant defective in three iron deficiency-induced Basic Helix-Loop-Helix genes of the subgroup Ib(2) to iron deficiency and salicylic acid.
    PLoS ONE, 2014. 9(6): p. e99234
    [PMID:24919188]
  2. Martínez-Trujillo M, et al.
    Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.
    Plant Mol. Biol., 2014. 86(1-2): p. 35-50
    [PMID:24928490]
  3. Li X,Zhang H,Ai Q,Liang G,Yu D
    Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2478-93
    [PMID:26921305]
  4. Van Dingenen J, et al.
    Strobilurins as growth-promoting compounds: how Stroby regulates Arabidopsis leaf growth.
    Plant Cell Environ., 2017. 40(9): p. 1748-1760
    [PMID:28444690]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
    S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
    Plant J., 2018. 94(1): p. 157-168
    [PMID:29396986]
  7. Kurt F,Filiz E
    Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
    Biometals, 2018. 31(4): p. 489-504
    [PMID:29546482]