PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0873s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 283aa    MW: 31655.3 Da    PI: 8.3398
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0873s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.64.9e-32112165255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Cagra.0873s0003.1.p 112 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 165
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15109165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28110165IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-24112165IPR006447Myb domain, plants
PfamPF002494.3E-7113164IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMMLESRNSM RASNTLPDLS LQISLPNSQA MKPLNGGDRS STSSDSGSSL SELSHENSFL  60
INKPLLSLGF DHHHHHHHQQ RHSNMFQPQI YGRDFKRSSS SMVGLKRSIR APRMRWTSTL  120
HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKCTD KGSTGEGKVE  180
KEAEQRIEDN SNNEEADEGT DTNSPNSSSL HKTQRTSWSS TKGVPMSISK QEESHLGTTH  240
HTKENKEKEA TNVHLNLEFT LGRPSWGMDY AEPSNDLTLL KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-16113167357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-16113167458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0873s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0486910.0AY048691.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI4 (KAN4) mRNA, complete cds.
GenBankBT0260530.0BT026053.1 Arabidopsis thaliana At5g42630 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280924.10.0probable transcription factor KAN4 isoform X1
SwissprotQ9FJV51e-169KAN4_ARATH; Probable transcription factor KAN4
TrEMBLR0EX630.0R0EX63_9BRAS; Uncharacterized protein
STRINGCagra.0873s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-165G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]