PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0860s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | GRAS | ||||||||
Protein Properties | Length: 483aa MW: 54039.7 Da PI: 6.2798 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 531.7 | 2.3e-162 | 54 | 479 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf+e++Pi Cagra.0860s0005.1.p 54 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPI 143 689*************************************************************************************** PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 lk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++ +ke l ++++rL + Ae+l++pf+fn+ Cagra.0860s0005.1.p 144 LKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQFNP 229 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.......................................................d 215 v++rl++l++e+Lrvk+gEalaV++vlqlh++l + Cagra.0860s0005.1.p 230 -VVSRLDCLNVEQLRVKTGEALAVSSVLQLHTFLasdddlmrkncalrfqnnpsgidlqrvlmmshgstaeapeneisnnngyspsgdsA 318 .7*************************************************************************************996 PP GRAS 216 esvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 +s++l s ++d++L+++++lsPk++vv+eq++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++l+g+ei+n++aceg+ Cagra.0860s0005.1.p 319 SSLPLLSsgRTDSFLNAIWGLSPKIMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIIACEGS 408 6666666679******************************************************************************** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ +++dgyr++eesg++v++W+drpL+svSaWr Cagra.0860s0005.1.p 409 ERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQGCGFDGYRIKEESGCAVICWQDRPLYSVSAWR 479 **********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.385 | 28 | 459 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-160 | 54 | 479 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MVAMLQEDNG TSSVASSPLQ VFSTMSLNRP TLLASSSPFH CLKDLKPEER GLYLIHLLLT 60 CANHVASGSL QNANAALEQL SHLASPDGDT MQRIAAYFTE ALANRILKSW PGLYKALNAT 120 QTRTNNVSEE IHVRRLFFEM FPILKVSYLL TNRAILEAME GEKMVHVIDL DASEPAQWLA 180 LIQAFNSRPE GPPHLRITGV HHQKEVLDQM AHRLIEEAEK LDIPFQFNPV VSRLDCLNVE 240 QLRVKTGEAL AVSSVLQLHT FLASDDDLMR KNCALRFQNN PSGIDLQRVL MMSHGSTAEA 300 PENEISNNNG YSPSGDSASS LPLLSSGRTD SFLNAIWGLS PKIMVVTEQD SDHNGSTLME 360 RLLESLYTYA ALFDCLETKV PRTSQDRIKV EKMLFGEEIK NIIACEGSER RERHEKLEKW 420 SQRIDLAGFG NVPLSYYAML QARRLLQGCG FDGYRIKEES GCAVICWQDR PLYSVSAWRC 480 RK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-62 | 37 | 481 | 1 | 380 | Protein SCARECROW |
5b3h_D | 2e-62 | 37 | 481 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0860s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012561 | 0.0 | AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence. | |||
GenBank | AY056154 | 0.0 | AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds. | |||
GenBank | AY091260 | 0.0 | AY091260.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006307373.1 | 0.0 | scarecrow-like protein 3 | ||||
Refseq | XP_006307374.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | R0GWE7 | 0.0 | R0GWE7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0860s0005.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0860s0005.1.p |
Publications ? help Back to Top | |||
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