PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0824s0115.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB_related | ||||||||
Protein Properties | Length: 600aa MW: 66621.4 Da PI: 5.4044 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.8 | 1.2e-08 | 496 | 544 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g W+ I r Rt ++k++w++++ Cagra.0824s0115.1.p 496 AWTLSEVVKLVEGVSKHGVGKWSEIKRLSFslsAYRTSVDLKDKWRNLR 544 7**************************99999999************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.333 | 489 | 548 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 490 | 549 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.8E-15 | 491 | 546 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-8 | 493 | 546 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 7.17E-20 | 495 | 545 | No hit | No description |
Pfam | PF00249 | 6.1E-6 | 496 | 544 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MFGTVEDYEE MFRDSIFQSR SGSLSSRNQT GNPVPYKLVR VAGDGRLVPA TDEEMLEVKE 60 LLKNNENDMP VLPDPIPTED ILDEGSPSQF LQLESFEGLF ESETAEANTE NLNSRLESQM 120 LIALPETQFK ITNVLCENEE QVQSEDLLRE PLLFPSNGCS MIQSGDVSPY LNATGSPKEP 180 ALSTAASQTE FSRVAGETYL DNLSIKALQE TFRAKFGRET TCKDKQWLKR RITLGSINSC 240 VVPTTSLTIA TNKLISGGQD SGEAFSKDAV DEERATESKD TPSSPDCTKG HSNDFGYSPV 300 ETFVDHYSGN EDFEGEYRSA KRVRKPTRRY IEEISKPDEK QQNDESMIPS KEQSSIQAVS 360 SGGRVVVTRM VSLAGSRIQV PYVSHVRRSR PRENIMALGE FHSKSSEVKG TPDESNLNLS 420 PSQWNNDVNR VSGVKSASGP VQKESRKDHL KPIFNEVDQD ITEPENLDSP GDISDDNNSV 480 DLPVTQSAIR RKHHRAWTLS EVVKLVEGVS KHGVGKWSEI KRLSFSLSAY RTSVDLKDKW 540 RNLRRACLSQ TASNRMGGLK KQGSMAIPSE IMLQVKELSQ KQSPVTKAKV VKRSRNGLL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0824s0115.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304808.1 | 0.0 | uncharacterized protein LOC17897993 isoform X1 | ||||
TrEMBL | R0GPJ1 | 0.0 | R0GPJ1_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0824s0115.1.p | 0.0 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4364 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 0.0 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0824s0115.1.p |