PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0820s0004.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 299aa    MW: 34646.1 Da    PI: 7.361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0820s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1670115147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  Cagra.0820s0004.1.p  70 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 115
                          899*****************************.***********996 PP
2Myb_DNA-binding60.43.7e-19122165146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++T+eE+e+l++a++++G++ W+ Iar ++ gRt++++k++w+ 
  Cagra.0820s0004.1.p 122 RRAFTEEEEERLLQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 165
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.06965116IPR017930Myb domain
SuperFamilySSF466893.63E-2968163IPR009057Homeodomain-like
SMARTSM007175.0E-1469118IPR001005SANT/Myb domain
PfamPF002495.1E-1670115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-2771123IPR009057Homeodomain-like
CDDcd001673.59E-1273114No hitNo description
PROSITE profilePS5129427.178117171IPR017930Myb domain
SMARTSM007174.2E-16121169IPR001005SANT/Myb domain
PfamPF002495.5E-16122164IPR001005SANT/Myb domain
CDDcd001673.49E-12124164No hitNo description
Gene3DG3DSA:1.10.10.601.2E-21124170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSEDHHPLMD QTASSDEYFS LNINNDQHLR SYSISHREEE VRNSYLSDYS KKDTANYASC  60
GHSSKASVSR GHWRPAEDAK LKELVAVYGP QNWNLIAEKL QGRSGKSCRL RWFNQLDPRI  120
NRRAFTEEEE ERLLQAHRLY GNKWAMIARL FPGRTDNSVK NHWHVIMARK FREQSSTYRR  180
RKTILPLKPL IKPNPHLFND FDPTKLALTH IVTKDQKQLM LPIPCFPGYE DGNESPLMVS  240
MLENEMVVGD YTAWTQEATT LDCLNQTEKS EMFERMNEEK KPLFFDFLGL GEGVISSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33701717108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0820s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493080.0AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006300946.20.0LOW QUALITY PROTEIN: transcription factor MYB105
SwissprotQ9SEZ40.0MY105_ARATH; Transcription factor MYB105
TrEMBLR0HVG40.0R0HVG4_9BRAS; Uncharacterized protein
STRINGCagra.0820s0004.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-178myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]