PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0820s0002.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 338aa MW: 37696.7 Da PI: 6.9921 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.4 | 5.7e-32 | 34 | 88 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl Cagra.0820s0002.2.p 34 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 88 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-28 | 32 | 89 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.99E-15 | 33 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-22 | 34 | 89 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-5 | 36 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.5E-23 | 137 | 183 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MCLLMEINNN GNDNNNSVNH KAKVMSLVLS TDAKPRLKWT CDLHHRFIEA VNQLGGPNKA 60 TPKGLMKAME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE VSSASENQEA ESNNDSRDLR 120 GCSVTEGNSN PTKEGLQITE ALQMQMEVQK KLHEQIEVQR HLQVKIEAQG KYLQSVLMKA 180 QQTLAGYSSS TLGMDFARTE LSRLASMVNR GCPSSSFSEL TQEEEAEEGF LWCKKPGNRG 240 ISQLRCSVES SLTSSETSET KLDDNNNINK SIELPLMEIK SEVMKGKKRS LNDAASVEHQ 300 PQMKRAFGVD EDEHLKLSLN SYKKDMEACP NIGLGFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-19 | 33 | 90 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0820s0002.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT029516 | 0.0 | BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023643551.1 | 0.0 | myb family transcription factor PHL8 isoform X2 | ||||
Swissprot | F4I274 | 0.0 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | R0IB87 | 0.0 | R0IB87_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0820s0002.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0820s0002.2.p |
Publications ? help Back to Top | |||
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