PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0820s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 339aa    MW: 37767.8 Da    PI: 6.9921
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0820s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.7e-323488155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+Wt++LH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  Cagra.0820s0002.1.p 34 KPRLKWTCDLHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 88
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-283289IPR009057Homeodomain-like
SuperFamilySSF466897.17E-153388IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-223489IPR006447Myb domain, plants
PfamPF002491.0E-53687IPR001005SANT/Myb domain
PfamPF143795.5E-23138184IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MCLLMEINNN GNDNNNSVNH KAKVMSLVLS TDAKPRLKWT CDLHHRFIEA VNQLGGPNKA  60
TPKGLMKAME IPGLTLYHLK SHLQKYRLGK SMKFDDNKLE AVSSASENQE AESNNDSRDL  120
RGCSVTEGNS NPTKEGLQIT EALQMQMEVQ KKLHEQIEVQ RHLQVKIEAQ GKYLQSVLMK  180
AQQTLAGYSS STLGMDFART ELSRLASMVN RGCPSSSFSE LTQEEEAEEG FLWCKKPGNR  240
GISQLRCSVE SSLTSSETSE TKLDDNNNIN KSIELPLMEI KSEVMKGKKR SLNDAASVEH  300
QPQMKRAFGV DEDEHLKLSL NSYKKDMEAC PNIGLGFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-193390158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0820s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295160.0BT029516.1 Arabidopsis thaliana At1g69580 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302512.10.0myb family transcription factor PHL8 isoform X1
SwissprotF4I2740.0PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLR0IB870.0R0IB87_9BRAS; Uncharacterized protein
STRINGCagra.0820s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]