PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cagra.0807s0009.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C3H | ||||||||
Protein Properties | Length: 351aa MW: 38750.8 Da PI: 6.4939 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 42.4 | 1.1e-13 | 48 | 71 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C+f++rtG Ck+G++CkF+H+ Cagra.0807s0009.3.p 48 AEDCSFYMRTGSCKFGSSCKFNHP 71 689********************9 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 77 | 95 | 7 | 25 |
SGGGGTS--TTTTT-SS-S CS zf-CCCH 7 rffartGtCkyGdrCkFaH 25 ++++rtG CkyG++C+F+H Cagra.0807s0009.3.p 77 QYYFRTGGCKYGESCRFNH 95 59***************** PP | |||||||
3 | zf-CCCH | 40.4 | 5e-13 | 119 | 142 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++++r+G Ck+G+ CkF+H+ Cagra.0807s0009.3.p 119 EVECPYYMRNGSCKFGAECKFNHP 142 789********************9 PP | |||||||
4 | zf-CCCH | 17.9 | 5.7e-06 | 250 | 275 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG Ck+ +Ck++H++ Cagra.0807s0009.3.p 250 DQPECSYYIKTGDCKFKFNCKYHHPK 275 689*********************96 PP | |||||||
5 | zf-CCCH | 33.4 | 7.9e-11 | 297 | 320 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++r+G+Ck+G+ C+F H+ Cagra.0807s0009.3.p 297 QNICTHYSRYGICKFGPACRFDHS 320 679********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.4E-7 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.432 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-11 | 48 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 51 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.29 | 73 | 97 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-6 | 77 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 78 | 97 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.46 | 79 | 98 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-7 | 116 | 143 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.887 | 116 | 144 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-11 | 119 | 142 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 119 | 143 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 122 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1 | 248 | 275 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.718 | 248 | 276 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 252 | 278 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-4 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 294 | 322 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-8 | 297 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 299 | 321 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
GLDSNAVVTN QEQEEDGDGY GCVYGDGDGW SENESEENEA VYPVRPGAED CSFYMRTGSC 60 KFGSSCKFNH PLSRKIQYYF RTGGCKYGES CRFNHTKSKS CLASVPELNF LGLPIRLGEV 120 ECPYYMRNGS CKFGAECKFN HPDPTTIGGT DSPSFHSNNG VSAGSFSPKS TFQASSASWS 180 SPRHANGSTP FIPVMLSQTH GVPSQTPEWN GYQVASVYSS ERGVFSSSNI SMLSQYHHQM 240 PAEEFPERPD QPECSYYIKT GDCKFKFNCK YHHPKNRLPK LPPYALNDKG LPLRPDQNIC 300 THYSRYGICK FGPACRFDHS AQLPYPTGNS QTIVEPPQVG ANGDEVDGWN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Cagra.0807s0009.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033139 | 1e-146 | BT033139.1 Arabidopsis thaliana unknown protein (At3g48440) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023638334.1 | 0.0 | zinc finger CCCH domain-containing protein 43 isoform X3 | ||||
Swissprot | Q9STM4 | 0.0 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | R0FPN0 | 0.0 | R0FPN0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.0807s0009.1.p | 0.0 | (Capsella grandiflora) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Cagra.0807s0009.3.p |
Publications ? help Back to Top | |||
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